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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g01649 ATGATACGAGCGGTGATAGTGATGAACGACCAAGGCAAGCCTCGCCTCGTCAAATTCTACGAACATCAGCCTGTGGAGAAACAACAAGAACTCATTCGTAGCATATATGGAGTTCTATGCAGTAGAGCTGAGAATGTGAGCAACTTTGTTCAAGTAGATTCGACTTTCGGACCGGATACCAGACTTGTATACAAGACTTTTGCTACACTGTACTTCATTGTCATATTTGATGATTCTGAAAATGAGCTTGCCATTCTAGATCTCATGCAAGTATTTGTGGAGACATTGGACAAATGTTTCAGCAATGTTTGTGAGCTTGATATAGTGTTCAATTTCAACAAGGTACATACCATCCTGGATGAGATTATCTTGGGAGGTCAGGCTGGAGAAGAACCCAAATTCAATCCTTGGAGTTCCAAAATCCATATCCGGTTGGCAGGGACGATAGATAAATAG 456 41.45 MIRAVIVMNDQGKPRLVKFYEHQPVEKQQELIRSIYGVLCSRAENVSNFVQVDSTFGPDTRLVYKTFATLYFIVIFDDSENELAILDLMQVFVETLDKCFSNVCELDIVFNFNKVHTILDEIILGGQAGEEPKFNPWSSKIHIRLAGTIDK 151
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g01649 151 SUPERFAMILY SNARE-like 1 127 IPR011012 -
Ceso2g01649 151 ProSitePatterns Clathrin adaptor complexes small chain signature. 62 72 IPR000804 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Ceso2g01649 151 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 133 IPR016635 GO:0015031(InterPro)|GO:0016192(PANTHER)|GO:0043231(PANTHER)
Ceso2g01649 151 PIRSF AP-complex-sigma 1 139 IPR016635 GO:0015031(InterPro)
Ceso2g01649 151 Gene3D - 1 135 - -
Ceso2g01649 151 Pfam Clathrin adaptor complex small chain 1 130 IPR022775 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g01649 K12399 AP-3 complex subunit sigma
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr1:8007394 Ceso2g01649 Ceso-Chr2:35189745 dispersed
Ceso Ceso-Chr2:35189745 Ceso5g01716 Ceso-Chr5:43192504 dispersed