AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ceso2g01674 | ATGGGGAGCTTTACCCCTGAAGAACTAACCTTGGATCTCAAACCACCTTTTATGATTATCCCCAAAACCATCTCTCAATTTCTTGGAGGAATCTCCACAATGAGTGACAAGCTATTGCAGGTTGATGATTTCCTTCACAGATTAGAATCTGAAACACTCAAAATCCAAGCATTCAAACCCCAACTCCCTCTATGCATGCTTCTCATCAATGATGCAATTGTTGCATTGAAAGAGGTTTCAATGGTGTTAAAGAAATCATCATCAACTGCTGATCAGCCTGTACTTGAAGAATTTATACCACTCAAGAACACTTGTCATGATAATGATGATGATGATGCAAAGGCTGATGAAATCATGATAAAAAAGGACAGTGGTGATAAAAAGAATTGGTTGAGCTCCACACAGCTTTGGAACACCAATGAGGACATCATCCAGAAACCAAATGCAAATGCAACAACTAAAAAGCAGGGAACTGAGGAAGAAAATTGTGGGAAAGGATTTTTCTTCCCTGAAATCAAGAATCCAATAAGGGAAAATGGTTTGATTACCGAAATCAATTGCGACACTAGATCGACACCAAATGTTCAATCAAACATACAGAGTGGCGGCACCGCCCCTCTGCCACCATACCAGCAGACATCTAGGAAACAAAGAAGATGCTGGTCCACAGAGTTGCATCGACGATTTCTCAACGCCTTGCAACAACTTGGCGGCTCACATGCGGCCACCCCTAAGCAGATTCGCGAGCTTATGCAAGTAGAGGGTCTCACGAATGATGAAGTGAAGAGTCATTTGCAAAAATATAGGCTTCATACACGAAGGCTTCCGTCTTCAAACACAAATCTACCGGGGGCTGTTTTGGGTGGCGGTTTATGGATGCCGCCACAAGATCAGTATGTTGTTGGATCCTCAAAATGTAGCAATTCTCAATCGGGTTCTCCCGATGGCCCCCTCCGCAACACTATGGACGACGAAGAAGATGAGAAATCGGAGAATTATGGCTGGAATGGTGGTAATCTTTAA | 1023 | 43.01 | MGSFTPEELTLDLKPPFMIIPKTISQFLGGISTMSDKLLQVDDFLHRLESETLKIQAFKPQLPLCMLLINDAIVALKEVSMVLKKSSSTADQPVLEEFIPLKNTCHDNDDDDAKADEIMIKKDSGDKKNWLSSTQLWNTNEDIIQKPNANATTKKQGTEEENCGKGFFFPEIKNPIRENGLITEINCDTRSTPNVQSNIQSGGTAPLPPYQQTSRKQRRCWSTELHRRFLNALQQLGGSHAATPKQIRELMQVEGLTNDEVKSHLQKYRLHTRRLPSSNTNLPGAVLGGGLWMPPQDQYVVGSSKCSNSQSGSPDGPLRNTMDDEEDEKSENYGWNGGNL | 340 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ceso2g01674 | 340 | MobiDBLite | consensus disorder prediction | 194 | 215 | - | - | |
| Ceso2g01674 | 340 | Gene3D | - | 215 | 273 | - | - | |
| Ceso2g01674 | 340 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 22 | 333 | IPR044787 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Ceso2g01674 | 340 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 213 | 273 | IPR017930 | - | |
| Ceso2g01674 | 340 | MobiDBLite | consensus disorder prediction | 301 | 317 | - | - | |
| Ceso2g01674 | 340 | FunFam | Myb family transcription factor | 215 | 273 | - | - | |
| Ceso2g01674 | 340 | Pfam | Myb-like DNA-binding domain | 218 | 269 | IPR001005 | - | |
| Ceso2g01674 | 340 | MobiDBLite | consensus disorder prediction | 301 | 340 | - | - | |
| Ceso2g01674 | 340 | SUPERFAMILY | Homeodomain-like | 213 | 274 | IPR009057 | - | |
| Ceso2g01674 | 340 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 216 | 271 | IPR006447 | GO:0003677(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ceso2g01674 | K28176 | GARP family transcription factor, NIGT1 subfamily |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 40277 | Ceso2g01674 | Ceso4g01885 | |
| 40278 | Ceso2g01674 | Ceso8g01161 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Ceso | Ceso-Chr2:36217214 | Ceso8g01161 | Ceso-Chr8:16596340 | dispersed | |
| Ceso | Ceso-Chr2:36217214 | Ceso2g04276 | Ceso-Chr2:103021470 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Ceso8g00283 | ACH | 196 | 326 | G2-like Transcription Factor family | AT1G32240 | 70.714 | 5.82e-56 | 184.0 | |
| Ceso8g01161 | ACH | 6 | 323 | G2-like Transcription Factor family | AT2G03500 | 37.222 | 3.40e-56 | 189.0 | |
| Ceso7g01899 | ACH | 18 | 401 | G2-like Transcription Factor family | AT5G18240 | 47.932 | 1.66e-108 | 321.0 | |
| Ceso6g00617 | . | 44 | 344 | G2-like Transcription Factor family | AT2G40260 | 37.025 | 4.25e-37 | 136.0 | |
| Ceso6g00083 | . | 6 | 178 | G2-like Transcription Factor family | AT2G01060 | 48.851 | 1.31e-51 | 168.0 | |
| Ceso6g00474 | ACH | 6 | 367 | G2-like Transcription Factor family | AT4G28610 | 44.048 | 1.89e-89 | 277.0 | |
| Ceso6g00848 | . | 168 | 326 | G2-like Transcription Factor family | AT5G06800 | 63.529 | 3.94e-63 | 209.0 | |
| Ceso6g01116 | . | 1 | 310 | G2-like Transcription Factor family | AT3G10760 | 53.963 | 1.64e-75 | 243.0 | |
| Ceso6g02749 | . | 44 | 173 | G2-like Transcription Factor family | AT2G40260 | 62.879 | 4.22e-46 | 161.0 | |
| Ceso6g03094 | . | 33 | 337 | G2-like Transcription Factor family | AT5G29000 | 48.544 | 6.08e-81 | 253.0 | |
| Ceso5g02708 | ACH | 73 | 145 | G2-like Transcription Factor family | AT2G40260 | 78.082 | 8.97e-34 | 127.0 | |
| Ceso5g03525 | ACH | 1 | 359 | G2-like Transcription Factor family | AT1G32240 | 49.361 | 1.23e-83 | 259.0 | |
| Ceso5g03507 | . | 1 | 245 | G2-like Transcription Factor family | AT5G45580 | 46.512 | 6.00e-61 | 192.0 | |
| Ceso4g01178 | . | 1 | 357 | G2-like Transcription Factor family | AT2G03500 | 53.266 | 9.84e-119 | 353.0 | |
| Ceso4g01296 | . | 14 | 163 | G2-like Transcription Factor family | AT3G12730 | 70.667 | 4.33e-70 | 220.0 | |
| Ceso4g01885 | ACH | 12 | 307 | G2-like Transcription Factor family | AT4G37180 | 35.695 | 3.96e-49 | 168.0 | |
| Ceso4g04135 | ACH | 2 | 309 | G2-like Transcription Factor family | AT1G25550 | 42.216 | 1.34e-71 | 224.0 | |
| Ceso4g04039 | . | 41 | 137 | G2-like Transcription Factor family | AT2G42660 | 57.576 | 2.88e-33 | 120.0 | |
| Ceso3g00544 | ACH | 192 | 326 | G2-like Transcription Factor family | AT1G32240 | 69.014 | 1.96e-54 | 181.0 | |
| Ceso3g00952 | . | 107 | 286 | G2-like Transcription Factor family | AT4G13640 | 59.794 | 8.68e-64 | 197.0 | |
| Ceso3g03064 | . | 19 | 302 | G2-like Transcription Factor family | AT5G16560 | 38.012 | 1.73e-39 | 147.0 | |
| Ceso3g04355 | ACH | 3 | 401 | G2-like Transcription Factor family | AT5G18240 | 46.991 | 7.17e-108 | 320.0 | |
| Ceso2g01674 | ACH | 6 | 317 | G2-like Transcription Factor family | AT2G03500 | 38.576 | 3.88e-53 | 179.0 | |
| Ceso2g03536 | . | 8 | 417 | G2-like Transcription Factor family | AT2G20570 | 47.727 | 3.63e-94 | 287.0 | |
| Ceso2g03784 | . | 42 | 110 | G2-like Transcription Factor family | AT2G42660 | 73.913 | 6.48e-31 | 116.0 | |
| Ceso2g04276 | ACH | 2 | 326 | G2-like Transcription Factor family | AT1G25550 | 50.97 | 3.00e-104 | 309.0 | |
| Ceso2g04238 | ACH | 21 | 82 | G2-like Transcription Factor family | AT2G02060 | 85.484 | 2.89e-33 | 120.0 | |
| Ceso2g04403 | . | 25 | 330 | G2-like Transcription Factor family | AT1G69580 | 48.22 | 5.65e-75 | 231.0 | |
| Ceso1g00633 | . | 254 | 403 | G2-like Transcription Factor family | AT5G16560 | 45.665 | 2.25e-27 | 105.0 | |
| Ceso1g01000 | ACH | 1 | 376 | G2-like Transcription Factor family | AT4G28610 | 46.193 | 5.82e-100 | 303.0 | |
| Ceso1g02251 | . | 46 | 133 | G2-like Transcription Factor family | AT2G40260 | 54.545 | 2.84e-27 | 101.0 | |
| Ceso1g02372 | . | 5 | 257 | G2-like Transcription Factor family | AT2G01060 | 71.875 | 4.36e-114 | 327.0 | |
| Ceso1g03135 | . | 13 | 192 | G2-like Transcription Factor family | AT5G42630 | 46.729 | 1.60e-45 | 150.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Ceso | Myb_DNA-binding | 1.3e-06 | CL0123 | TF | GARP-G2-like |