AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03165 ATGGTCTCATTCATTGCACTTGTTGTTCTACTTTTCCCTTTGGCAGCAACAATGGTTTTAGAAAGCCGCAGAGATGCACAACAACTGCCACTTGGTAATCTAAGCAATTTGCAAGGGACGATGAACGAGGAATCGGTTGAGTTTACTGATTTAGTGGAAGCTCTTGAATCTGATAGCATTGATAAAACATCTTTGGAAAAGGAAAGATTATTAACCATCCAGGATCCCCAAGTTAAGACAAGTATAGTAGATTGCAATATTCATTTTCCAGCATCTATACAAGATATTCAAAGGTGGAACGGTGCTCCTCCTATACGACGCAAGTTGGTTCAAGTAAACACCCATCATTTTCCTTCCGAGGCTCATGAAATACGTGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGAACATGGTGGTACTTCTTTATTGGAGGAAGAAATAGAACCCATTCCGTTTACTGTTTCTAAAGCGGATACCGATGGGGGTGGAATCGACAATACCACAATTATTATTGTTGTTGTTTCTACTTCAATCGTCACGTTTCTTCTCGCTACCATTCTGTTTTGTTGGTATACTAGGAGTTTTGGTGGGGGGAAAAATGATGAAAAACCTCTTCTCAGCTTAAGTACGAGTGCCTCACAAAAATCTTTCAAAGATTCTTCTGGTGATCAACCATTTTCAGACCTACAGAAAAAAAATTCTTCTGTACATGCAAGTGTATCGGTAGCCTTAGCACCAGAGGCACCTCCAGGAAGTTTGAGTGCTTCCGGAATACCTCCTCTAAAACCTCCGCCTGGAAGGGCTGAATCGACGTTAAAGCCTCCACCTGGAAGGACTGATTTGTCTGTACACCCTCCTCCATCTGTAAATAGTGTTTTGACTCCTCCTCGATCACCTGCTGCAGCTCCAGCTCCAGCTCCAGCTCCAGCTCCTCCTCTAAGAGCTCCTTCAGCTAGACGTCCCCACCGCCTCCTCCACCATCTAGAGGAGTACCCCCACCGCCTCCTCCCCTCAAGGAAGGTCCGCGTCCACCGCCACCTCCTCCTCCAATATTGTGACCCTGATGCCGATGATTCTAACAAGACTAAGTTGAAGCCGTTCTTCTGGGATAAGGTTATGGCAACCCCTGATCAAGCAATGGTTTGGAATCAGATTAGAGCAGGATCATTTCAGTTCAATGAAGAAATGATAGAAAATTTATTTGGCTATAATGCTGTCGATAAAAATAAAAGCAGCAACAAGAAGAGTTCAGCTGCACAAGATCCTTCTTCGAATTACGTTCAAATTATTGATTCAAAGAAGGCCCAAAATTTGTCTATTCTTCTAAAAGCACTGAATGTGACAACAAATGAAGTTTGTGATGCACTTAAAGAAGGAAATGAGCTCCCTGTAGAACTTATTCAAACTTTGCTGAAGATGGCACCAACTGGAGAGGAAGAACTGAAGCTAAGGTTGTATAACGGGGATCTTTCTCGCCTTGGAACTGCAGAGCGGTTTCTAAAGAGATTGGTTGAAATACCCTTTGCTTTTAAAAGGCTCGAGTCATTGCTTTTTATGTGCACGCTTCAAGACGAGGAAGAAATCATTAAGGAGTCCTTCCAAACGTTAGAGGCTGCTTGCGTACAGCTTAGGAAAAGTCGGTTGTTCCTCAAACTTTTGGAAGCTGTTCTAAAAACAGGGAATCGTATGAATGATGGAACTTTCCGTGGCAGTGCCCAAGCATTCAAACTTGACACACTCTTGAAGCTTTCAGATGTAAAAGGTGTCGATGGGAAAACGACTCTTTTGCATTTTGTGGTACTGGAGATTATTCGTGCAGAAGGTATTAGAGCTGCCAAAACCGGTGATTTTCATGAAGAAGTTGCTGCTAATTCTTTTCAAGGTGATACAGATGAATATTATGGCACCCTTGGTCTTCAGGTTGTGTCTAGGTTGAGTAGTGAGCTCGAGGATGTCAAGAAAGCAGCCATTCTTGATGTCGAAGGCTTGACTGGTACAGTCTCTAAATTTGGTCAGGCACTCGTAAAAGCTCGTGAGTTCCTAAATACAGATCTCAAGAGATTTGATAAAGAAGACGAGGATGAAGATGACGACGATGATGATGACGATGATGAGTTCGCGACAACTTTATCCAACTTTGTGCAAACCGCTGAGAAGGATGTCATGTGGATGCTCGAGGAAGAAAAAAGAATAATGACTCTTATGAAGAACACCGCAGATTATTTCCATGGTCAGGCCGGGAAGGATGAAGGATTACGATTATTCATCATTGTTCGTGATTTCCTTATAATTTTAGACAAAGTGTGTAAAGAGGTCAAAGCCATGCCTCTACGGCCCTCACTTAAGACATCATCAACAAAAGATGTTTCATCACCTAGGACCACACAGAAAAATGATGTCAAGACGACAACTAGAACACAGGAAACCGATGAGACACCTAGAACACAAGACGAGGATTCGCCACGCAAGATATGGGAAACTAAGGATCCACAACAGGAACAACCTACGGATTTGCGACATGAAGTTGATGATTTACATGAAACAGAATCATCATACAAGATACAAAAAACGGATGATGGGCAACATGAAAGGATAGAATCACAACAAGTTGATGATTCACTACATCAATCACGAGAAATTGATAATTTGTTACATGACACGCATCAGAAAGATGACGATGATTTAGAACCCAAGACACATGAAGATGATTTGCGACATCAATCAATGGAACATGATGATCCACAATCTAAGATGCGGGAAGAAGATGTTTCGCAACCTAAAACAAATGAACAACTTGTTCCTGCCATTGCCATAACGGATAGTTCTAACTCAAGTTCAGATAAGGACAATCCATAG 2859 42.04 MVSFIALVVLLFPLAATMVLESRRDAQQLPLGNLSNLQGTMNEESVEFTDLVEALESDSIDKTSLEKERLLTIQDPQVKTSIVDCNIHFPASIQDIQRWNGAPPIRRKLVQVNTHHFPSEAHEIREEEEEEDEEEEEHGGTSLLEEEIEPIPFTVSKADTDGGGIDNTTIIIVVVSTSIVTFLLATILFCWYTRSFGGGKNDEKPLLSLSTSASQKSFKDSSGDQPFSDLQKKNSSVHASVSVALAPEAPPGSLSASGIPPLKPPPGRAESTLKPPPGRTDLSVHPPPSVNSVLTPPRSPAAAPAPAPAPAPPLRAPSARRPHRLLHHLEEYPHRLLPSRKVRVHRHLLLQYCDPDADDSNKTKLKPFFWDKVMATPDQAMVWNQIRAGSFQFNEEMIENLFGYNAVDKNKSSNKKSSAAQDPSSNYVQIIDSKKAQNLSILLKALNVTTNEVCDALKEGNELPVELIQTLLKMAPTGEEELKLRLYNGDLSRLGTAERFLKRLVEIPFAFKRLESLLFMCTLQDEEEIIKESFQTLEAACVQLRKSRLFLKLLEAVLKTGNRMNDGTFRGSAQAFKLDTLLKLSDVKGVDGKTTLLHFVVLEIIRAEGIRAAKTGDFHEEVAANSFQGDTDEYYGTLGLQVVSRLSSELEDVKKAAILDVEGLTGTVSKFGQALVKAREFLNTDLKRFDKEDEDEDDDDDDDDDEFATTLSNFVQTAEKDVMWMLEEEKRIMTLMKNTADYFHGQAGKDEGLRLFIIVRDFLIILDKVCKEVKAMPLRPSLKTSSTKDVSSPRTTQKNDVKTTTRTQETDETPRTQDEDSPRKIWETKDPQQEQPTDLRHEVDDLHETESSYKIQKTDDGQHERIESQQVDDSLHQSREIDNLLHDTHQKDDDDLEPKTHEDDLRHQSMEHDDPQSKMREEDVSQPKTNEQLVPAIAITDSSNSSSDKDNP 952
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03165 952 MobiDBLite consensus disorder prediction 290 317 - -
Ceso2g03165 952 ProSiteProfiles Formin homology-2 (FH2) domain profile. 355 792 IPR015425 -
Ceso2g03165 952 MobiDBLite consensus disorder prediction 117 146 - -
Ceso2g03165 952 MobiDBLite consensus disorder prediction 804 927 - -
Ceso2g03165 952 PANTHER FORMIN-RELATED 142 948 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Ceso2g03165 952 Pfam Formin Homology 2 Domain 360 765 IPR015425 -
Ceso2g03165 952 MobiDBLite consensus disorder prediction 124 142 - -
Ceso2g03165 952 MobiDBLite consensus disorder prediction 781 952 - -
Ceso2g03165 952 Gene3D Formin, FH2 domain 361 804 IPR042201 -
Ceso2g03165 952 SUPERFAMILY Formin homology 2 domain (FH2 domain) 368 776 - -
Ceso2g03165 952 MobiDBLite consensus disorder prediction 249 318 - -
Ceso2g03165 952 MobiDBLite consensus disorder prediction 257 272 - -
Ceso2g03165 952 MobiDBLite consensus disorder prediction 928 952 - -
Ceso2g03165 952 MobiDBLite consensus disorder prediction 781 803 - -
Ceso2g03165 952 SMART it6-source 355 781 IPR015425 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03165 K28090 formin
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Event-related genes

Select Gene_1 Gene_2 Event_name
40046 Ceso1g03996 Ceso2g03165
40409 Ceso2g03165 Ceso4g01442
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
970276 Ceso Ceso1g03996 Ceso-Chr1:101564658 Ceso2g03165 Ceso-Chr2:80295809
973253 Ceso Ceso2g03165 Ceso-Chr2:80295809 CesoJARYMX010000101g00005 CesoJARYMX-ChrJARYMX010000101:56261
999807 Ceso Ceso2g03165 Ceso-Chr2:80295809 Ceso4g01442 Ceso-Chr4:24805216
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
CesoJARYMX010000101g00005 . 436 867 FH2 protein (formin) gene family AT5G54650 64.465 0.0 556.0
Ceso7g01305 ACH 427 880 FH2 protein (formin) gene family AT5G67470 71.922 0.0 632.0
Ceso5g02329 . 783 1102 FH2 protein (formin) gene family AT2G25050 68.125 1.78e-147 444.0
Ceso5g03048 ACH 440 844 FH2 protein (formin) gene family AT5G54650 60.247 1.57e-149 466.0
Ceso5g03483 . 1 431 FH2 protein (formin) gene family AT1G31810 71.23 0.0 699.0
Ceso4g00258 ACH 189 900 FH2 protein (formin) gene family AT5G54650 45.296 3.48e-155 475.0
Ceso4g01442 ACH 405 900 FH2 protein (formin) gene family AT5G54650 58.867 0.0 583.0
Ceso2g03165 ACH 436 874 FH2 protein (formin) gene family AT5G54650 64.159 0.0 558.0
Ceso1g00311 ACH 454 884 FH2 protein (formin) gene family AT5G67470 71.594 0.0 606.0
Ceso1g01128 . 553 1008 FH2 protein (formin) gene family AT3G25500 67.462 0.0 593.0
Ceso1g03327 ACH 1228 1644 FH2 protein (formin) gene family AT5G07740 71.523 0.0 637.0
Ceso1g03329 . 1 334 FH2 protein (formin) gene family AT5G07740 59.767 2.98e-131 424.0
Ceso1g03328 . 298 342 FH2 protein (formin) gene family AT5G07740 66.667 1.54e-13 68.6
Ceso1g03996 ACH 436 867 FH2 protein (formin) gene family AT5G54650 64.465 0.0 556.0
Ceso1g04182 ACH 1225 1642 FH2 protein (formin) gene family AT5G07740 72.791 0.0 635.0
Ceso1g04184 ACH 1215 1640 FH2 protein (formin) gene family AT5G07740 66.125 1.68e-179 557.0
Ceso1g04188 ACH 1392 1597 FH2 protein (formin) gene family AT5G07740 72.857 4.39e-96 307.0
Ceso1g04183 ACH 174 505 FH2 protein (formin) gene family AT5G07760 39.189 3.88e-61 208.0