AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03185 ATGATGCAGCAGCAGCAGCAGAAACAGAGTTGTTTGCCTCCCCTGTCTTTAAACTACTACCCGTGGTTGGTTGCTTATGACCAAGATAGCGGAGACCAGATTTTCTACAATATCCATGACCCGTTGTCTTGCTATCGGTGTCGAATCCCTGAGTTGGTCGGGAAAAGTATCAGTGCGTTTTTCCATGGATGGGTTGTTCTCTCCAACCATCAACAAACAATCTGGTTTCTTTGGAACCCAATAGCAGCCAGGTTGATTCGCCTCCCGCGTTTACTTCTCAAAGATGATGTAGATCCTGATTATCCCCTTCAGTGTTGTTATTTGTCGTCCCCTCCCGATGTTCCTGGTTCCATTCTCCTGTTGGCAAGAAGTGATAAGCCTAACTTTGTTTTCTGTAGGTTAGACCGTAAAAGAAAACGATTAAGATGGACAGAGATGTCATATGCTAAACAGCTCACTAGCATAATTGGTCCTCGTGTTGATGATCACGACACTGGGATCCTATCTTGTTTAACCTGTTGGAATGGTGAAGTGTATGCCGCCCGTGGTGGTTGGGTCGTAAAAGTTCACATTGTGGTTAAGGAGAAGTCAGTCCTGATAAGTCTCTTGCCATTTGTGAAATTCCCCCGACTTTTTAATGATACCCCGTCTGGTCGAGCTGTCTGCTCGTGTATATTCTTTCCAAAATCTTCTTTAGAACTGTTGGTAGTTTTTGTAGATCTTGTTGAGCTAGAGAAGAAAAAACCTGTTGGTGTATCTTTGTGTAAACTGGATATAACTAGCATGGTGTGGGTGGAAAAGGAAGACTTGGAAGACACTGTGTTATACGTTGGTGATTACTGCAGCCATGCCTTTGTCTCGGAATTTGGGGGTTATGTACACATTCTTCACGAAAGGGGCAAAGTAGTATATTCATACAATGTTAAAGATAAAACCATCTCGATGTCCTTTATGCATTGTCTACTAGACTTGACACCAAGCCATGTCATGGTATGGGCAATGCCCAAGCCTGAATTTAGGTTACAAAGTGATGGAAAATGCGAAGTTGTTTCTAAATCATATGGAAAGTGCAAAGCTAAGAAAGATGAGTTGGTGGTAAAGGAAGTAGTGCAAAAGGAGATTGAAGCAAATCATGTGCTGAATCTTCCGTTTCATGTTTTGGAGATGATAATGGAGTTTTGTGCCGGTGTCGAATACCTAAACTTTCGTGCTACATGCAAACTTTGTCATCTAGCAGGGCCCCTGATTAACAGAAAAGTGCCGCAGAGGGGGCTGCAGGCATATTCATTAGTTTCACCATGGTTGATGGTGTTTGACAAACGTGAAGGCATCATCACTTTCACAGATCCGATGTTCGGTGACAAGTACTTTATAAGACCATCATCTCCGGAAATCGTTTCCGATAGCAGACTAGCGTGTTCCAGGTACGGTTGGTTGTTGTTGCTTATCGGGGACTCACGTATGGCCTTCTTTAACCCTTTCACAAGTGAAATCCGTGAGCTTCCTGCAGGAAGGATTGTTTGCAATACTTTTTGTTTCTCAACACCACCAACTTCCCCTGATTGTATGGTGGTGGGGTTTTCAAGCTTGCGTGTTTTCTTCAACTTTGTAGCTGGGGAACCGACTTGGCATCAATTGGATCTGGATATTGGTGGTGCCACTCCATTTTTTTACAAGTTTCCAACTATTTGTGGTCGAGATGTTTATGCCTTGGATAATCATGGGAAAGTTGATGTTTTCAGAGAAGATTACACGTGGGAGGCCGTTGTAGACCAGCCCTCAACAAGTAGTTGCTCTGAGGCAGAGTATTTCCTAACAACATGCAATCAACATCTTTTATTATTGATGGTTGGAGATTTTGGAGAAGGAGTTGAGGTATTCAAGTTGACTGAAGAATTAGAATGGGAGAAAATGGATCGTTTAGGAAGGTATGCAATTTATATTTGTGATGCATCATCAGCATCGACATGTGTCTGCATGGCCGCTAAAACACCAGAAATGGAGAACAAAATCTTTTTTTCAAGATTCCATTCCAAGAACGGGAAGGTTATGTTTTACTCTTTGGAAACAGGCAGGTTTCACACGCTTGATGGCAGGAATATTGGCCAGGAAGCTAGTCTCGAGGATTTTTATCAGCATATGTACGATCATACCTGGATTGAACCAACTTGGGCTTTGAAGGTTGAGAAAGATTTGAAGTTCCATCAATTGCAGGCTTACATGCAAGATCAATATCGATTACTTGGAGAAAATGTAGCTAGGTTAAGAACCGATCTTATGAAGGAGCAGCTTTCTACCTTTCGTTCTCAATTAGAAGATTTTGCTCGCAAACATAAGAACGATATTCGCAAGAACCCTGCTTTCAGATCACAGTTTCACGAGATGTGTGCAAAAGTAGGAGTAGACCCACTCGCATCAAATAAAGGTTTCTGGGCTGAGCTCTTAGGGATCGGTGATTTCTATTATGAACTTGGGGTGCAAATCGTTGATGTCTGCTTGGCTACTAGACCCCATAATGGGGGTTTGATCAACTTGGAGGAGCTATGCAAGCTTCTAAGTCAAAGACGAAAGGGTGCTCGTGAGGTTGTGTCCGAAGATGATTGCTTGCGTGCAATTGGTAAACTCAAGGTGTTAGGGAGTGGTTTTGAAGTGATTACTGTTGGAAAAAGAAAGCTTGTTCGCTCCGTCCCAACTGAATTGAAGAAAGATCATAATGAAATTCTAGAGTTGTCTCAAGCTCAAGGTTTTGTGACAGTTGAGGAAGTAGAGAGACGGCTGTCATGGTCCAGTGGTCGTGCCACCGATGCCCTTGAAACTTTATTAGACGAGGGGCTTGCGATGATTGATGAAGGCCACAGAGATGGCAAACGACGCTATTGGTTCCCTTGTGTCTCTTCCGTCTCTTCCTTTGTGGCATCTGAGACTCTTTGA 2931 43.06 MMQQQQQKQSCLPPLSLNYYPWLVAYDQDSGDQIFYNIHDPLSCYRCRIPELVGKSISAFFHGWVVLSNHQQTIWFLWNPIAARLIRLPRLLLKDDVDPDYPLQCCYLSSPPDVPGSILLLARSDKPNFVFCRLDRKRKRLRWTEMSYAKQLTSIIGPRVDDHDTGILSCLTCWNGEVYAARGGWVVKVHIVVKEKSVLISLLPFVKFPRLFNDTPSGRAVCSCIFFPKSSLELLVVFVDLVELEKKKPVGVSLCKLDITSMVWVEKEDLEDTVLYVGDYCSHAFVSEFGGYVHILHERGKVVYSYNVKDKTISMSFMHCLLDLTPSHVMVWAMPKPEFRLQSDGKCEVVSKSYGKCKAKKDELVVKEVVQKEIEANHVLNLPFHVLEMIMEFCAGVEYLNFRATCKLCHLAGPLINRKVPQRGLQAYSLVSPWLMVFDKREGIITFTDPMFGDKYFIRPSSPEIVSDSRLACSRYGWLLLLIGDSRMAFFNPFTSEIRELPAGRIVCNTFCFSTPPTSPDCMVVGFSSLRVFFNFVAGEPTWHQLDLDIGGATPFFYKFPTICGRDVYALDNHGKVDVFREDYTWEAVVDQPSTSSCSEAEYFLTTCNQHLLLLMVGDFGEGVEVFKLTEELEWEKMDRLGRYAIYICDASSASTCVCMAAKTPEMENKIFFSRFHSKNGKVMFYSLETGRFHTLDGRNIGQEASLEDFYQHMYDHTWIEPTWALKVEKDLKFHQLQAYMQDQYRLLGENVARLRTDLMKEQLSTFRSQLEDFARKHKNDIRKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDVCLATRPHNGGLINLEELCKLLSQRRKGAREVVSEDDCLRAIGKLKVLGSGFEVITVGKRKLVRSVPTELKKDHNEILELSQAQGFVTVEEVERRLSWSSGRATDALETLLDEGLAMIDEGHRDGKRRYWFPCVSSVSSFVASETL 976
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03185 976 Gene3D - 816 896 IPR036388 -
Ceso2g03185 976 FunFam Vacuolar-sorting protein SNF8 816 896 - -
Ceso2g03185 976 Pfam Domain of unknown function (DUF295) 21 287 IPR005174 -
Ceso2g03185 976 Pfam Domain of unknown function (DUF295) 433 686 IPR005174 -
Ceso2g03185 976 Gene3D - 897 975 IPR036388 -
Ceso2g03185 976 FunFam Vacuolar protein sorting-associated protein 897 975 - -
Ceso2g03185 976 Gene3D - 749 810 - -
Ceso2g03185 976 PANTHER EAP30 SUBUNIT OF ELL COMPLEX 731 969 IPR016689 GO:0000814(PANTHER)|GO:0000814(InterPro)|GO:0043328(PANTHER)|GO:0071985(InterPro)
Ceso2g03185 976 Pfam EAP30-Vps36 family 736 950 IPR040608 -
Ceso2g03185 976 SUPERFAMILY Winged helix DNA-binding domain 900 964 IPR036390 -
Ceso2g03185 976 SUPERFAMILY Winged helix DNA-binding domain 749 899 IPR036390 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03185 K12188 ESCRT-II complex subunit VPS22
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Event-related genes

Select Gene_1 Gene_2 Event_name
40413 Ceso2g03185 Ceso4g01387
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
973266 Ceso Ceso2g03185 Ceso-Chr2:80484654 CesoJARYMX010000072g00002 CesoJARYMX-ChrJARYMX010000072:27936
999816 Ceso Ceso2g03185 Ceso-Chr2:80484654 Ceso2g04244 Ceso-Chr2:102228388