AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03194 ATGAAGGTTCACATCGCTCGTAATTTAAACCTAGCCTTCGATTACCGCCGGTTCGTTGCTTCTTCTATTTCATCCATTTCATCCATTTCCTCACTCCGGCCACCGGCGGCGGCGGATTATTACTCTCTAGCTAATAAGATTCGTACGAAGCGTTCCTGTTCTTCCTTAGGCCGGTTCAATTTATCGAGTGTTGCTGCAGTTCGAGATTCTAAGGCCATGGGATCGCTAGCGGGGGAGGTGGAGTGGCCGGCCAATAAAGTTAGGGATTCGTTTATTAAGTTCTTTGAAGAGAAGAATCATGTTTATTGGAAATCAAGTCCGGTTGTTCCTGTTAATGATCCAACTCTTCTCTTTGCAAATGCTGGAATGAATCAGTTCAAGCCTATCTTTTTGGGCACTGCTGATCCTAACACCTCCCTGAGCAAACTGACTCGTGCCTGCAACACTCAGAAGTGCATTCGAGCTGGTGGGAAGCATAATGATCTCGATGATGTTGGCAAAGACACCTATCACCACACCTTTTTTGAGATGCTTGGTAACTGGTCTTTTGGGGACTATTTTAAAAATGAAGCCATTGGATGGGCATGGGAGCTTCTTACAACTGTTTTTAAGCTACCTACTGATCGAATATATGCTACTTATTTTGGCGGTGATGAGAAATTGGGTCTTCCTGCTGATAATGAAGCTAAAGAGATATGGCTCAAATATCTGCCAGCCAAACGAGTATTGCCTTTTGGTTGTAAAGACAACTTCTGGGAGATGGGTGATACTGGACCTTGTGGACCCTGTACTGAAATACACTTTGATAGAATTGGTGGTCGTGATGCTGCAGAGTTGGTCAACAACGATGATCCTACATTGATCGAGATATGGAATGTTGTTTTTATTCAGTTTAACCGAGAAGCTGATGGTTCCTTGAAACCTCTGCCTTCCAAACACGTGGATACTGGAATGGGTTTTGAAAGATTGACTTCAATTCTTCAGAACAAGATGAGCAACTATGATACTGATGTCTTCATGCCCATTTTTGATGCTATTCAACAGGCAACTGGCGCTAGACCATATTCAGGGAAAGTTGGTGCAGATGATCTGGATGGAATTGACATGGCATACAGAGTTGTTGCTGACCACATTAGGACTCTTTCATTTGCCATTGCAGATGGTTCTTGTCCAGGCAATGAAGGGCGTGAATATGTTTTGCGACGCATTCTTCGCAGAGCTGTTCGCTATGGAACAGAAGTACTGAAAGCAAAGCAAGGATTTTTCAATGGATTAGTAAAAGTTGTGGTGGATGTAATGGGCCATGTTTTTCCTGAATTAAAGCAGCAAGAGGCACACATTAGAGAGATCATAGCAGAAGAGGAAGCAAGTTTTGGAAGAACGTTAGTCCATGGAATTGAGAAGTTTAAGAGGACGGCTGAAGCTGTTAAGGGAAAGATATTTAGTGGGCAGGCAAATCAAGAAGTGCTCAAATTATCTGATGCATTTGTGTTGTGGGACACTTTTGGATTTCCATTGGATCTGACTCAGTTGATGGCAGAAGAAAGAAAGTTGGAGGTTGATGTTGAGGGTTTCAATATTGCTATGAATGAAGCCAGAGAACGATCAAGAAACGCCCAGAATAAGCAAGCTGCTGTTGCTATTGTCATGAATGCAGATGCCACCTCTGCACTGCATAAGAGAGGAATTGCCACAACAAATGATAGTTTCAAGTTTACATGGTTTCAGGACCACAAAAGTGTGATCAAAGCCATTTACACAGGGAGTGAGTATGTGGAACATGCTGCTGTCGGCGATGATGTTGGTATTATTCTTGAGAGCACAAGTTTTTATGCGGAGCAAGGTGGTCAGATATATGATACTGGAGTACTTGGAGGCCCCTCTGGATCGTTTGAAGTTTGTAATGTTCAAGTTTATGGAGGTTTTGTGATTCATCTTGGTAAAATTGCAAACGAATCTGGAAAATTCAGTGTGGGAGATGAAGTAATTTGTAAGGTTGACTATGACAGGCGTCAGCGCATTGCTCCAAACCATACCTGTACACACATGTTAAATTTCGCCCTCCGGGAAGTACTTGGGAATCATGTTGACCAGAAAGGATCCATTGTTCTTCCAGAGAAATTAAGATATGACTTTTCCCATGGGAAGCCTGTAAAGCCGGAAGACCTCCGCAAGATTGAAGCCATTGTAAACGAGCAAATTAAAGCCGAACTAGATGTATCTGCAAAGGAGGCAAGTCTTGCTGATGCTAAGCGTGTAAATGGATTGCGAGCAGTTTTTGGTGAAGTGTATCCTGATCCCGTTAGGATTGTTGCAATTGGTCGAAAAGTAGAAGATCTCTTGGCTGATCCTGAAAGTGAAGAGTGGCTGTCCATATCTGCAGAGCTTTGTGGAGGGACTCATATTGCAAATACACGAGAGGCAAAGGCATTTGCACTTTTATCTGAGGAAGGAATTGCAAAGGGGATTCGGAGAGTAACTGCTGTAACAACAGACTATGCATTTGAGGCTATGAAAAAGGCATCTGAACTCGAACAAGAAGTTGATCAGGCATCAAAGCTAGAAGGAAGCCTTCTTGAACAGAAAGTGACCTCTTTAAATGGTCAAGTAGAGTCGGCCGCTATTCCAACAGCAAAAAAAACTGATCTTAAGGCCAAAATCTCAATCCTTCAGAATCAAGTAATAAAAGCAAAAAAGAAGATTGCTGAAGAGAACATACGCAAAGCCGTTGAGGCAGCCACTAAAGCCGCAGAAGTTGCCTCTTCTGAGGGGAAGGCCTTTTGCATTTCAAATGTTGATGTGGGTTCGGATACTGCTGCTATTCGTGAAGCAGTTGTCAAAGTCATGGAGCAGAAGGGATTGGCGGTGATGGTTTTTAGCACTGATGAAGAATCAAAGAAGGCCTTAGTTTGTGCTGGTGTGCCGGAAAAAAGCGATAACAGCAACCGTCTGAAGGTTTTAGAGTGGCTCAAGGCTGCGTTGAAGCCACTTGAAGGCAAAGGTGGTGGAGGGAAAGGTGGTCTTGCTCAAGGCCAGGGACCCGATATCAAGCATGTAGATGAAGCAATAGACGTGGCCAAGTCATTTGCAGCGCTCAAACTGGGTTGA 3108 43.53 MKVHIARNLNLAFDYRRFVASSISSISSISSLRPPAAADYYSLANKIRTKRSCSSLGRFNLSSVAAVRDSKAMGSLAGEVEWPANKVRDSFIKFFEEKNHVYWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTSLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIGWAWELLTTVFKLPTDRIYATYFGGDEKLGLPADNEAKEIWLKYLPAKRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDAAELVNNDDPTLIEIWNVVFIQFNREADGSLKPLPSKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDLDGIDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGTEVLKAKQGFFNGLVKVVVDVMGHVFPELKQQEAHIREIIAEEEASFGRTLVHGIEKFKRTAEAVKGKIFSGQANQEVLKLSDAFVLWDTFGFPLDLTQLMAEERKLEVDVEGFNIAMNEARERSRNAQNKQAAVAIVMNADATSALHKRGIATTNDSFKFTWFQDHKSVIKAIYTGSEYVEHAAVGDDVGIILESTSFYAEQGGQIYDTGVLGGPSGSFEVCNVQVYGGFVIHLGKIANESGKFSVGDEVICKVDYDRRQRIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRYDFSHGKPVKPEDLRKIEAIVNEQIKAELDVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVAIGRKVEDLLADPESEEWLSISAELCGGTHIANTREAKAFALLSEEGIAKGIRRVTAVTTDYAFEAMKKASELEQEVDQASKLEGSLLEQKVTSLNGQVESAAIPTAKKTDLKAKISILQNQVIKAKKKIAEENIRKAVEAATKAAEVASSEGKAFCISNVDVGSDTAAIREAVVKVMEQKGLAVMVFSTDEESKKALVCAGVPEKSDNSNRLKVLEWLKAALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDVAKSFAALKLG 1035
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03194 1035 NCBIfam alanine--tRNA ligase 86 1013 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ceso2g03194 1035 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 82 840 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Ceso2g03194 1035 PANTHER ALANYL-TRNA SYNTHETASE 79 1031 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Ceso2g03194 1035 Gene3D - 667 843 - -
Ceso2g03194 1035 SUPERFAMILY ThrRS-AlaRS common domain 666 838 IPR018163 GO:0000166(InterPro)
Ceso2g03194 1035 FunFam Alanine--tRNA ligase, cytoplasmic 667 842 - -
Ceso2g03194 1035 Coils Coil 834 861 - -
Ceso2g03194 1035 SMART tRNA-SAD-4 768 827 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Ceso2g03194 1035 FunFam Alanine--tRNA ligase 565 665 - -
Ceso2g03194 1035 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 768 826 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Ceso2g03194 1035 Coils Coil 522 542 - -
Ceso2g03194 1035 SUPERFAMILY Translation proteins 596 666 IPR009000 -
Ceso2g03194 1035 Pfam DHHA1 domain 883 1029 IPR003156 GO:0003676(InterPro)
Ceso2g03194 1035 Hamap Alanine--tRNA ligase [alaS]. 82 1034 IPR023033 GO:0004813(InterPro)
Ceso2g03194 1035 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 335 547 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Ceso2g03194 1035 Gene3D - 592 666 - -
Ceso2g03194 1035 Gene3D - 920 1030 - -
Ceso2g03194 1035 Gene3D Bira Bifunctional Protein; Domain 2 83 331 IPR045864 -
Ceso2g03194 1035 PRINTS Alanyl-tRNA synthetase signature 288 299 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ceso2g03194 1035 PRINTS Alanyl-tRNA synthetase signature 396 409 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ceso2g03194 1035 PRINTS Alanyl-tRNA synthetase signature 315 328 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ceso2g03194 1035 PRINTS Alanyl-tRNA synthetase signature 160 171 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ceso2g03194 1035 PRINTS Alanyl-tRNA synthetase signature 372 388 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Ceso2g03194 1035 FunFam Alanine--tRNA ligase 922 1030 - -
Ceso2g03194 1035 FunFam Alanine--tRNA ligase, cytoplasmic 81 331 - -
Ceso2g03194 1035 Coils Coil 880 912 - -
Ceso2g03194 1035 CDD AlaRS-core 84 330 - -
Ceso2g03194 1035 SUPERFAMILY Class II aaRS and biotin synthetases 83 334 IPR045864 -
Ceso2g03194 1035 Pfam tRNA synthetases class II (A) 86 670 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03194 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
973271 Ceso Ceso2g03194 Ceso-Chr2:80554215 Ceso4g01640 Ceso-Chr4:29171165
999820 Ceso Ceso2g03194 Ceso-Chr2:80554215 Ceso4g01598 Ceso-Chr4:28302035