AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03212 ATGCTCCATTTTTCACCTTTTCTTGTTTTAAATTGTTGTCAATTTCTTCAGGTATCATCTGTAAAGCTTCAATCTGCTTTCCTTGGTGTTGCTGTTTCTGGGGAATCTTCATCTTTACAGTTGAGGAAATCTCACACACGATGTATCAATTCAATTAAAGCTACTGCTACTCAGGTGCCCACTAGCGTTCCAAAGTCTAGTACCGGTGGGAAGAAGACTAGAGTTGGAATCAATGGTTTTGGAAGAATTGGAAGGTTGGTATTGAGAATAGCGACATTTAGAGATGATATCGAGGTTGTTGCAGTCAACGACCCTTTTATTGATTCCAAGTACATGGCTTACATGTTGAAGTATGATTCTACACATGGCGTATTTAAAGGAACTATCAAGGTTGTTGACGAGTCTACCTTGGAGATCAACGGGAAGCAGATAAAAGTGAGTAGCCAAAGGTATTCAAATGGTCTTCTATTGGTAAACAACATTTATACATTTATTACTTTTGAAATGAGCTCTCGTTTATTTGATCCTAAACATCAACTATGGCTTGTGCTCAGAGACCCAACGACGATCCCTTGGGGTGATTTTGGAGCTGACTATGTTGTAGAATCTTCCGGGGTCTTTACAACACTTGATAAGGCTTCCGCACACAAGAAGGGTGGTGCCAAGAAGGTGGTGATCTCAGCTCCATCCGCGGATGCCCCTATGTTTGTTGTGGGAGTAAATGAGACCACATACAAGCCGAGCATGGATGTTGTATCCAATGCTAGTTGCACCACTAATTGCTTAGCTCCATTAGCCAAGGTGGTTCACGAGGAGTTCGGTATTGTTGAAGGTTTGATGACGACTGTGCATGCAACCACAGCTACACAAAAGACCGTTGATGGACCTTCAATGAAGGATTGGCGTGGAGGCCGTGGTGCCGCCCAAAACATCATCCCTAGCTCAACTGGCGCTGCCAAGGCAGTAGGGAAGGTGCTACCGGAACTAAATGGGAAACTTACGGGTATGGCCTTTAGAGTCCCAACGGCTAATGTCTCAGTTGTGGATTTAACTTGTCGACTTGAGAAGAGTGCTTCTTATGAAGATGTCAAAGCTGCAATAAAGTATGCCTCCGAGGGTCCCATGCAAGGGATTCTTGGTTACACCGATGAGGATGTTGTCTCCAATGATTTTGTTGGCGATTGCAGATCAAGCATTTTTGATGCAAAAGCTGGAATAGGGCTAAGTTCGTCATTTGTGAAGTTGGTGTCGTGGTACGACAACGAGTGGGGTTACAGGTTCCAACCGAGTATTGGACCTCATCGAGCATATGGCGTTGGTGGCGGCAGCTTCCAACTAAAGGGCAAAATGGTCATTTTTATTGGTGAAAGTGATAGTGTAGAATTGAATCAATGTTTTGATGTTGGAAGTGATGGCTTGCCATTACTTGGGACAAGCTTTGGGAATAAAGGATATATGAACAACCAAAAAGAAAAGAAAAAAAAAGATCCACCAACCCACATTCATCCATGGCGTTCTCTTCCCTTCTCAATCCACCAACCCTTCTTCTCCCCTTCTTCTTCAACCCTCCAATCAACCACTTTCATCCCCATCTCTACCCACTCGATCGCAGGTGAAGTTTCCATCTACCTTTTTGGGTGCTACCGTTTCTGGGGAGTCTTCTTTTGTACAGTTGAGTTTTTTCTTTTTGGGAAGTCTCATGCATGTCGTGTTCATTCGATAAAAGCGACTGCCACCCAGGCGCCGCCTGCTGTGCCAAAATCTGGGACCAGTGGGAAGACCAGGGTTGGAATCAATGGTTTTGGAAGAATTGGAAGGTTGGTATTGAGAATAGCGTCATTTAGAGATGATATTGAAGTTGTTGCGGTCAATGACCCTTTTATTGATTCCAAGTACATGGCTTACATGTTGAAGTATGATTCTACTCATGGTCTATTTAAAGGAACCATAAAGGTTGTTGACGAGTCCACTTTGGAAATCAACGGGAAGCAGATAAAAGTAACCAGCCAGAGGGACCCAGCAACGATTCCATGGGGTGATTTTGGAGCCGACTTTGTTGTAGAATCTTCTGGGGTTTTTACCACACTTGACAAGGCTTCCGCACACAAGAAGGGTGGTGCGAAGAAAGTGGTGATCTCAGCTCCATCGGCAGACGCACCTATGTTTGTTGTGGGAGTAAACGAGACCACGTACAAACCAAGTATGGATATTGTATCAAATGCAAGCTGCACCACTAACTGCTTAGCTCCTTTAGCCAAGGTGGTTCACGAGGAGTTCGGTATCGTTGAAGGTTTGATGACGACTGTGCATGCAACCACAGCTACACAAAAAACCGTTGACGGACCTTCGATGAAGGATTGGCGTGGAGGTCGTGGTGCTGCACAGAACATCATCCCTAGCTCAACTGGCGCTGCCAAGGCCGTAGGGAAGGTGTTACCGGAACTAAATGGGAAACTTACGGGTATGGCATTTAGAGTGCCAACAGCGAATGTTTCTGTTGTTGATTTAACTTGTCGACTTGAGAAGAAGGCTTCTTATGAAGACGTTAAAGCTGCAATTAAGTATGCCTCTGAGGGTCCACTGCAGGGAATTCTTGGGTACACTGACGAGGATGTCGTTTCCAACGATTTTGTTGGTGATTCGAGATCAAGTATTTTTGATGCAAAAGCCGGGATAGGGCTAAGTGCTTCATTTGTTAAGCTGGTGTCGTGGTACGACAACGAGTGGGGTTACAGCAACCGGGTGTTGGACCTGATAGAGCATATGGCGTTGGTGGCGGCTTCCAACTGA 2790 45.02 MLHFSPFLVLNCCQFLQVSSVKLQSAFLGVAVSGESSSLQLRKSHTRCINSIKATATQVPTSVPKSSTGGKKTRVGINGFGRIGRLVLRIATFRDDIEVVAVNDPFIDSKYMAYMLKYDSTHGVFKGTIKVVDESTLEINGKQIKVSSQRYSNGLLLVNNIYTFITFEMSSRLFDPKHQLWLVLRDPTTIPWGDFGADYVVESSGVFTTLDKASAHKKGGAKKVVISAPSADAPMFVVGVNETTYKPSMDVVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTANVSVVDLTCRLEKSASYEDVKAAIKYASEGPMQGILGYTDEDVVSNDFVGDCRSSIFDAKAGIGLSSSFVKLVSWYDNEWGYRFQPSIGPHRAYGVGGGSFQLKGKMVIFIGESDSVELNQCFDVGSDGLPLLGTSFGNKGYMNNQKEKKKKDPPTHIHPWRSLPFSIHQPFFSPSSSTLQSTTFIPISTHSIAGEVSIYLFGCYRFWGVFFCTVEFFLFGKSHACRVHSIKATATQAPPAVPKSGTSGKTRVGINGFGRIGRLVLRIASFRDDIEVVAVNDPFIDSKYMAYMLKYDSTHGLFKGTIKVVDESTLEINGKQIKVTSQRDPATIPWGDFGADFVVESSGVFTTLDKASAHKKGGAKKVVISAPSADAPMFVVGVNETTYKPSMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTANVSVVDLTCRLEKKASYEDVKAAIKYASEGPLQGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFVKLVSWYDNEWGYSNRVLDLIEHMALVAASN 929
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03212 929 Gene3D - 595 922 - -
Ceso2g03212 929 SMART gp-dh-n-7 594 743 IPR020828 GO:0051287(InterPro)
Ceso2g03212 929 SMART gp-dh-n-7 73 257 IPR020828 GO:0051287(InterPro)
Ceso2g03212 929 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 593 759 IPR036291 -
Ceso2g03212 929 Gene3D Dihydrodipicolinate Reductase; domain 2 743 909 - -
Ceso2g03212 929 Gene3D Dihydrodipicolinate Reductase; domain 2 257 423 - -
Ceso2g03212 929 FunFam Glyceraldehyde-3-phosphate dehydrogenase 256 421 - -
Ceso2g03212 929 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 589 923 IPR020831 GO:0016620(InterPro)
Ceso2g03212 929 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 73 276 IPR036291 -
Ceso2g03212 929 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 255 262 IPR020830 GO:0016620(InterPro)
Ceso2g03212 929 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 256 419 - -
Ceso2g03212 929 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 595 917 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Ceso2g03212 929 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 741 748 IPR020830 GO:0016620(InterPro)
Ceso2g03212 929 Gene3D - 74 425 - -
Ceso2g03212 929 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 702 715 IPR020831 GO:0016620(InterPro)
Ceso2g03212 929 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 737 755 IPR020831 GO:0016620(InterPro)
Ceso2g03212 929 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 821 838 IPR020831 GO:0016620(InterPro)
Ceso2g03212 929 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 764 780 IPR020831 GO:0016620(InterPro)
Ceso2g03212 929 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 861 876 IPR020831 GO:0016620(InterPro)
Ceso2g03212 929 FunFam Glyceraldehyde-3-phosphate dehydrogenase 742 907 - -
Ceso2g03212 929 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 262 419 IPR020829 GO:0016620(InterPro)
Ceso2g03212 929 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 748 905 IPR020829 GO:0016620(InterPro)
Ceso2g03212 929 FunFam Glyceraldehyde-3-phosphate dehydrogenase 594 752 - -
Ceso2g03212 929 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 74 151 IPR020828 GO:0051287(InterPro)
Ceso2g03212 929 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 595 695 IPR020828 GO:0051287(InterPro)
Ceso2g03212 929 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 742 905 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03212 K00134 glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
Ceso2g03212 K05298 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13]
Ceso2g03212 K25224 glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107]
Ceso2g03212 K03472 D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
Ceso2g03212 K00150 glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:80990296 Ceso4g04530 Ceso-Chr4:100108255 dispersed
Ceso Ceso-Chr2:80990296 Ceso2g03137 Ceso-Chr2:79870677 transposed