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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03230 ATGGCCTTCATCTCTAAAGTTCACAACTTTTCCGGCGACTTTCAAACTCCGGCAACCGCCCTACCGTTGTGGTATGATGTCGAAACTTCGCCAGAAAATTTCTTCGATAACTATGGGATCACACTAATGCCTCCGGAATATGATGTCACCATGCCTCCGTTATCTCGATCGATGTCATGGAAGGCGACTTCGTTAATCCCGGAGAGATTCGGGGTTTCGGAGATGGTGGTTCCGACCTCACCGGCGGGCGGTGGTGGCGGTTTTCAGGCGGATTATAGGAAGGTTGAACAAGATGAGTATTTTTGTAGTAGTGGTAGCTATGGAAGTAGTTCATGGTCATCATCTACTTCTAGTTATCCAACTGCAAACACTAATTGGGAAATCGAAAGCCAGAAAACGAGTAAAGAGATCGAAGAACCGACGTTGAAGGTCGGGAGGTATTCGATGGAAGAAAGGAAAGATAAGATCTTGAGGTATCTCAAGAAAAGAAACCAAAGGAACTTCAACAAGACTATTAAGTATGAATGCCGGAAGACGCTAGCCGACAAGCGAATACGAGTTAGAGGGAGGTTTGCAAAGAACAACAATGATCATCATCATCATCAACCTTGTGATCAAGATCAAGTGCTTCCCATCATCACTAATGCATCTAACAATCATCCTTCTGATGAAGATATTCAACAACTATTCACCAACAATTTTCTGGTGAAGCAAGATTATGATGAAGAGGAAGAGTGGCTGCAACAAGCAATGGCTAGTTTATTGTATTCACCATGTATCAATACAGATTGA 792 43.18 MAFISKVHNFSGDFQTPATALPLWYDVETSPENFFDNYGITLMPPEYDVTMPPLSRSMSWKATSLIPERFGVSEMVVPTSPAGGGGGFQADYRKVEQDEYFCSSGSYGSSSWSSSTSSYPTANTNWEIESQKTSKEIEEPTLKVGRYSMEERKDKILRYLKKRNQRNFNKTIKYECRKTLADKRIRVRGRFAKNNNDHHHHQPCDQDQVLPIITNASNNHPSDEDIQQLFTNNFLVKQDYDEEEEWLQQAMASLLYSPCINTD 263
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03230 263 Pfam CCT motif 152 194 IPR010402 GO:0005515(InterPro)
Ceso2g03230 263 ProSiteProfiles CCT domain profile. 152 194 IPR010402 GO:0005515(InterPro)
Ceso2g03230 263 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 76 252 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03230 K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:81351385 Ceso3g00622 Ceso-Chr3:8221889 dispersed
Ceso Ceso-Chr2:81351385 Ceso7g02184 Ceso-Chr7:39245129 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ceso8g00615 . 49 406 C2C2-CO-like Transcription Factor family AT5G24930 50.388 7.51e-96 290.0
Ceso8g01024 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 46.131 4.00e-80 243.0
Ceso8g01039 . 1 224 C2C2-CO-like Transcription Factor family AT1G75540 50.0 6.21e-66 207.0
Ceso7g00038 ACH 312 397 C2C2-CO-like Transcription Factor family AT5G24930 40.698 3.00e-10 58.5
Ceso7g02184 ACH 334 386 C2C2-CO-like Transcription Factor family AT5G24930 49.057 5.10e-11 62.0
Ceso6g00211 . 8 328 C2C2-CO-like Transcription Factor family AT2G47890 39.84 6.80e-76 236.0
Ceso6g00699 . 221 324 C2C2-CO-like Transcription Factor family AT5G57660 40.0 1.29e-14 67.0
Ceso6g00739 . 282 338 C2C2-CO-like Transcription Factor family AT5G15850 45.614 2.18e-12 63.9
Ceso5g02205 . 289 401 C2C2-CO-like Transcription Factor family AT1G68520 27.434 1.55e-06 48.1
Ceso5g03072 ACH 3 114 C2C2-CO-like Transcription Factor family AT4G27310 50.833 5.32e-31 112.0
Ceso4g00226 . 1 167 C2C2-CO-like Transcription Factor family AT4G38960 60.714 6.01e-78 230.0
Ceso4g00276 . 1 87 C2C2-CO-like Transcription Factor family AT4G27310 54.545 1.76e-28 106.0
Ceso4g00275 ACH 1 75 C2C2-CO-like Transcription Factor family AT4G27310 61.842 8.53e-29 106.0
Ceso4g01575 ACH 178 299 C2C2-CO-like Transcription Factor family AT1G78600 45.926 1.21e-21 86.3
Ceso4g03007 ACH 259 331 C2C2-CO-like Transcription Factor family AT5G57660 41.096 7.76e-11 60.1
Ceso4g04174 . 12 280 C2C2-CO-like Transcription Factor family AT1G68190 40.667 1.75e-61 201.0
Ceso3g00622 . 190 276 C2C2-CO-like Transcription Factor family AT2G24790 41.379 2.05e-11 62.0
Ceso3g01032 ACH 305 380 C2C2-CO-like Transcription Factor family AT5G24930 45.455 7.73e-12 64.7
Ceso3g03126 . 2 355 C2C2-CO-like Transcription Factor family AT5G57660 46.373 1.02e-92 281.0
Ceso2g01583 . 1 206 C2C2-CO-like Transcription Factor family AT1G75540 52.427 2.80e-63 197.0
Ceso2g02823 . 56 347 C2C2-CO-like Transcription Factor family AT3G02380 51.02 5.86e-88 267.0
Ceso2g03230 . 228 319 C2C2-CO-like Transcription Factor family AT3G02380 39.13 3.58e-09 54.7
Ceso1g00021 . 12 401 C2C2-CO-like Transcription Factor family AT2G33500 38.824 1.38e-73 233.0
Ceso1g03422 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 44.898 3.24e-77 237.0
Ceso1g04231 . 123 319 C2C2-CO-like Transcription Factor family AT3G02380 29.13 8.46e-17 78.2
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ceso CCT 1.2e-17 CL0281 TR Others