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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03239 ATGGAGATTTTAGCGCTTTCTTCGAATCAAGCCCTAATTTCGGCCAATTTCACCTCCAGATCCGTTTCCGCCACCGGATTCTCTCTGCCGTGCCTTAAGTCTCCGGCGGTATGCCGCCTCCGCCGGAAACCGGCGGCGATTAGGGCGTCGGTTGCCGTGGAGCAGCAACAGACGCAGACGAAGGTCGCGATTATCAGGATTGGAACCAGAGGAAGCCCATTAGCCCTTGCACAAGCTTATGAGACACGCGATAAGCTAATGGCTACTAGCAGCGAGTTGGCAGAAGAGGGGGCTATTCAGATTGTTGTGATTAAAACAACAGGTGATAAAATATTGAGCCAACCTCTTGCTGATATTGGTGGGAAGGGTCTGTTCACTAAAGAAATAGACGAGGCGCTTCTAAATAGTGAAATTGACATTGCTGTGCATTCAATGAAAGACGTTCCTACTTATTTGCCCGAGAAAACAATTTTGCCCTGCAATCTTCCTCGTGAGGATGTCCGTGATGCCTTTATTTCATTGAATGCAAGCTCATTAGCTGATCTTCCAGCTGGAAGTGTCGTTGGTACTGCATCACTTCGAAGGAAGTCTCAACTACTTAACAGATATCCGTCACTCACTGTGCTGGAAAATTTTCGAGGCAACGTGCAGACTAGGTTAAAGAAACTAAACGAAGGGGTTGTCCAAGCAACATTATTAGCGTTGGCCGGACTCAAACGCTTAAGTATGACTGAGCATGTGAGTGCCATTCTTTCTATCGATGACATGCTTCCGGCTGTTGCACAAGGTGCAATTGGGATCGCTTGTCGAAGTGATGACGATAAGATGGCTAATTACATTGCAAAGTTGAACCATGAAGAAACAAGATTAGCAGTTGCATGTGAGAGGGCATTCCTATTGACACTTGATGGATCTTGTAGGACACCCATAGCTGGATATGCTTGTAGAGATGAGGATGGTAATTGCCTCTTTAGAGGCTTGGTGGCCTCACCAGATGGAACTAAAGTGCTGGAAACTTCTAGAAAAGGACTGTATTCTTATGACGATATGATTCTGATGGGGGAGGATGCCGGCAAGGAACTACTGTCACGTGCGGGCCCGGGTTTTTTTGATAGTTGA 1119 46.74 MEILALSSNQALISANFTSRSVSATGFSLPCLKSPAVCRLRRKPAAIRASVAVEQQQTQTKVAIIRIGTRGSPLALAQAYETRDKLMATSSELAEEGAIQIVVIKTTGDKILSQPLADIGGKGLFTKEIDEALLNSEIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLNASSLADLPAGSVVGTASLRRKSQLLNRYPSLTVLENFRGNVQTRLKKLNEGVVQATLLALAGLKRLSMTEHVSAILSIDDMLPAVAQGAIGIACRSDDDKMANYIAKLNHEETRLAVACERAFLLTLDGSCRTPIAGYACRDEDGNCLFRGLVASPDGTKVLETSRKGLYSYDDMILMGEDAGKELLSRAGPGFFDS 372
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03239 372 PANTHER PORPHOBILINOGEN DEAMINASE 61 370 IPR000860 GO:0004418(InterPro)|GO:0004418(PANTHER)|GO:0005737(PANTHER)|GO:0006783(PANTHER)|GO:0033014(InterPro)
Ceso2g03239 372 SUPERFAMILY Periplasmic binding protein-like II 64 282 - -
Ceso2g03239 372 NCBIfam hydroxymethylbilane synthase 65 361 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Ceso2g03239 372 Gene3D - 65 274 - -
Ceso2g03239 372 PIRSF PBGD 40 372 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Ceso2g03239 372 Pfam Porphobilinogen deaminase, dipyromethane cofactor binding domain 65 277 IPR022417 GO:0004418(InterPro)|GO:0033014(InterPro)
Ceso2g03239 372 PRINTS Porphobilinogen deaminase signature 207 224 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Ceso2g03239 372 PRINTS Porphobilinogen deaminase signature 108 128 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Ceso2g03239 372 PRINTS Porphobilinogen deaminase signature 294 311 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Ceso2g03239 372 PRINTS Porphobilinogen deaminase signature 139 158 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Ceso2g03239 372 PRINTS Porphobilinogen deaminase signature 187 204 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Ceso2g03239 372 FunFam Porphobilinogen deaminase 65 168 - -
Ceso2g03239 372 Gene3D - 285 371 IPR036803 GO:0004418(InterPro)|GO:0033014(InterPro)
Ceso2g03239 372 SUPERFAMILY Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 284 371 IPR036803 GO:0004418(InterPro)|GO:0033014(InterPro)
Ceso2g03239 372 CDD PBP2-PBGD-1 64 343 - -
Ceso2g03239 372 Hamap Porphobilinogen deaminase [hemC]. 64 364 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Ceso2g03239 372 Pfam Porphobilinogen deaminase, C-terminal domain 290 362 IPR022418 GO:0004418(InterPro)|GO:0033014(InterPro)
Ceso2g03239 372 ProSitePatterns Porphobilinogen deaminase cofactor-binding site. 295 311 IPR022419 GO:0004418(InterPro)|GO:0018160(InterPro)|GO:0033014(InterPro)
Ceso2g03239 372 Gene3D - 166 266 - -
Ceso2g03239 372 FunFam Porphobilinogen deaminase, chloroplastic 169 266 - -
Ceso2g03239 372 FunFam Porphobilinogen deaminase 285 372 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03239 K01749 hydroxymethylbilane synthase [EC:2.5.1.61]