AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ceso2g03256 | ATGAACGATATTAACAACTCATTCGGGAAAGGAAGTGTGACAAGGCTTGGAAGTCTTGGTGGAGCTCTTGTAGAAACATTCCCAAGTGGCTGTCTCTCCTTAGACCTTGCGTTAGGTGGTGGCCTGCCTAAAGGAAGAATCGTGGAGATTTATGGACCTGAAAGTAGTGGAAAGACCACCTTGGCACTACATGCCATTGCAGAAGTGCAGAAGCTAGGCGGCAATGCGATGCTTGTTGATGCAGAGCATGCGTTTGATCCATCGTATTCTAAAGCACTAGGAGTAGATGTAGAGAATTTGATTGTTTGTCAACCGGACAATGGGGAGATGGCACTAGAGATTGCCGACCGCATGTGTAGATCTGGTGCCGTTGATCTCATTTGCATCGATTCAGTCTCAGCTCTTACTCCACGAGCCGAGATTGAAGGAGAGATCGGAATGCAACAAATGGGTTTGCAAGCACGTCTTATGAGTCAAGCATTACGTAAAATGTCAGGCAATGCATCCAAAGCAGGATGCACTCTTATCTTCCTTAACCAAATAAGATATAAGATTGGTGTGTATTATGGGAATCCGGAAGTTACAAGTGGAGGAATTGCCTTGAAGTTTTTTGCATCTGTTCGACTTGAAATACGACCTATTGGGAAGATAAAGTCTGTTAAAGGTGATGAGGACGTTGGGGTTAAGGTTCGAGTAAGAGTTCAAAAGAGTAAGATTGTAAGGTCCGCAATGATGGAGGGAAGCGGGCAAGCAGTTACTTCCTACACTCGAAACTCCACACCATTCCTTGAAGACGATGATTCATTTGAAGAGCTCCAAGAGCAAACGTAA | 831 | 44.65 | MNDINNSFGKGSVTRLGSLGGALVETFPSGCLSLDLALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAVDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRPIGKIKSVKGDEDVGVKVRVRVQKSKIVRSAMMEGSGQAVTSYTRNSTPFLEDDDSFEELQEQT | 276 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ceso2g03256 | 276 | SMART | AAA-5 | 44 | 215 | IPR003593 | GO:0016887(InterPro) | |
| Ceso2g03256 | 276 | MobiDBLite | consensus disorder prediction | 256 | 276 | - | - | |
| Ceso2g03256 | 276 | Pfam | recA bacterial DNA recombination protein | 2 | 240 | IPR049428 | - | |
| Ceso2g03256 | 276 | ProSitePatterns | recA signature. | 200 | 208 | IPR020584 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro) | |
| Ceso2g03256 | 276 | Gene3D | - | 22 | 246 | IPR027417 | - | |
| Ceso2g03256 | 276 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 4 | 240 | IPR027417 | - | |
| Ceso2g03256 | 276 | NCBIfam | recombinase RecA | 1 | 240 | IPR013765 | GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro) | |
| Ceso2g03256 | 276 | CDD | RecA | 24 | 239 | - | - | |
| Ceso2g03256 | 276 | PRINTS | RecA protein signature | 80 | 109 | IPR013765 | GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro) | |
| Ceso2g03256 | 276 | PRINTS | RecA protein signature | 152 | 181 | IPR013765 | GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro) | |
| Ceso2g03256 | 276 | PRINTS | RecA protein signature | 197 | 225 | IPR013765 | GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro) | |
| Ceso2g03256 | 276 | PRINTS | RecA protein signature | 114 | 143 | IPR013765 | GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro) | |
| Ceso2g03256 | 276 | ProSiteProfiles | RecA family profile 1. | 23 | 181 | IPR020588 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0140664(InterPro) | |
| Ceso2g03256 | 276 | PANTHER | RECA | 1 | 241 | IPR013765 | GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro) | |
| Ceso2g03256 | 276 | ProSiteProfiles | RecA family profile 2. | 186 | 239 | IPR020587 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ceso2g03256 | K03553 | recombination protein RecA |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Ceso | Ceso-Chr2:81703264 | Ceso5g01734 | Ceso-Chr5:43472515 | dispersed |