AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03264 ATGTCTGGAGGCGATGAGAATGATGATCACGCTGTAGTACAGTTGCGATCGAGTTCCTTTTCGTCTTCAGGCGATGATTTGGAAGGTAGAGTATCGTCGTCTGTGAGGAGTGGTGGTAAGAGTAGTATTAAGGATCTGTGGAGGAAGTTAGATCGGAGGTTTTCTGGTAGACGGCTTAGTGTGAAGAGGCGGTTGCGTAGGGAGGATCGGACGGATTTAGGTTATGCGACGGTTAGCGGTGGCGGAGGCGGTGGTGATGAGGCGCTTGGAGACGGTGCTCCTCCGGAATGGGCTATGTTGCTTATTGGATGTCTGCTTGGATTGGCAACTGGACTCTGTGTAGCTGCTTTTAATCTTGGGTCCTTTCCCTTGTCCACTTCACCTGTTGTTGTTGTTGCTATTGCTGTTGTGGTTGTTGTTCTCACTCCGTGCCTTGAAACATGCTCAGTTTCTGTTGTCATCAATGTCTTATCCGATCCAATTACAATTGGATATCCAATGATCATCCGTCGGGATGCTAAACATGTTACCGTCCTGCTGTATCCTGGTTACCTGACAGCAAAGTTCTCAATACAGGTGCATGTAATACATGAATGGTCTTGGGCCGGTACCCCTAACGAAGGTGCTGCTTGGCTACGTTTACAGAGGCTGGGTGACACTTGGCACCGGATCCTTCTAATACCCGTCGCTGGAGGAGTCATCGTTGGGGTGTTGCATGGTTTACTTGAAATATTACACCAGATAAAACAGTCCAATCCCGGACATGACTTTAACCTGCTTTCGGGAGTCTTTCCATCCGTGAAGGCTATACAAGCTGCTGTAACCTTAGGTACTGGCTGTTCTTTGGGTCCTGAAGGACCTAGTGTAGATATCGGGAAATCATGTGCCAATGGATTCTCATTAATGATGGAAAATAACAAGGAACGCAGGATAGCTCTTGTTGCGGCTGGTGCAGCGGCTGGCATATCTTCAGGTTTCAATGCAGCAGTAGCTGGGTGTTTCTTTGCCATTGAGACTGTGTTAAGGCCTCAATGTGCTGAAAACTCTCCCCCTTTCACAACTGCAATGATAATTTTGGCATCGGTTATTTCATCAACTGTGTCAAGTGTTATACTTGGAGAAAAGCAGGCTTTCTCAGTGCCGACGTATGATTTGAAATCTGCTGCTGGTATTTTGTCTCATTCTAGTTCAATTAACCGTTGCTGTAAAAAGAACATGTATGTGATACAAAATCTGCCAACGGTATCTTATGGCATCTCCAGTGGCCAGTGGGTGGGTCTTGGACTGGAATTTTGTATCTTTCTTGCAGAACTACCTCTCTACTTGATCCTGGGAATGCTATGTGGTGTCGTTAGTGTGCTATTTACTCGCTTAGTAGCTTGGTTCAACAAAGCATTTGCATATATCGAGGAAACGTTTGGACTTCCCGCTATCGTTTCTCCGGCATTAGGTGGTCTAGGAGCAGGGTTGATTGCTCTAAAATATCCTGGAATTTTGTACTGGGGATTCACTAATATCGATGAAATTTTACATACTGGGAAGACGGCTTCGGCACCTGGAATCTGGCTATTAGCGCAGTTAGCTGCCGCTAAAGTTGTGGCTACGGCTCTTTGCAAAGGTTCAGGGCTTGTTGGTGGTCTGTATGCACCAAGTTTGATGATAGGTGCTGCAGTAGGTGCCGTATTTGGAGGTTCAGCAGGGAAATTGATTAACTCGGCCATATCGGGAAATGCTGCTATTGCTCAGCCGCAGGCGTATGCATTAGTTGGAATGGCTGCTACTTTGGCTTCTGTTTGTTCTGTACCCTTGACTTCGGTTCTGCTTCTGTTTGAGCTCACAAAGGATTATAGAATCTTGCTTCCTCTCATGGGAGCCGTTGGATTGGCAATATGGGTTCCATCTGTCGCGAACCAATCTAAGGAGGCTGAGGGATCCGAAACAAGAAGTTCATCAAGAGGTTATTCCGTTCTTTCACCAACTGACGACAAAACGGACGATTGGAGACAAAATGGCGAAGACGATTTGGAACTTTGCATAATGGGACCCGGTGATAGCCATGAAGCAATCGATGAGGATATCATTCTCGAGGATCTAAAGGTTTCTCAGGCTATGTCAAACATTTATCCGAAAGTCCTGTTATCATCAACTGTTAACGAGGCTGTAAAATGCATGAACGATAGCCAACAAAGTTGTGTGCTTGTCGTTGATCACGAAGATCACTTAGAAGGGATTCTGACACATGGTGACGTTAAAAGGGGCATTTTTAAGACCCCCAATGGATCCTCCGACAATGGTCCGTCAACTTCAGATTTAAGTGCGTATTTGGTATCTTCTATTTGCACTCAAGGGATGAACTATCGTGGAAGAAAGCGTGGACTTCTAACTTGTTATCCCGATACCGATTTGGCAATTGCTAAAAAACTAATGGAGGCCAAAGAAATTAAGCAATTACCCGTGGTACAGCACGTTGTCGATTATCAAGAAGAACGAAAGCGCAGAGTTGTTGCCATTCTCTACTACCATTCGGTCTGGAGCTGTCTCAGGTTACGACCAAACTCTTATGTTCTAATCGTTCTAGATTTAAAGCTCGGTTTTAGAACTCCTCCGACCTTTTACTATTGTCGTATTTAA 2631 45.42 MSGGDENDDHAVVQLRSSSFSSSGDDLEGRVSSSVRSGGKSSIKDLWRKLDRRFSGRRLSVKRRLRREDRTDLGYATVSGGGGGGDEALGDGAPPEWAMLLIGCLLGLATGLCVAAFNLGSFPLSTSPVVVVAIAVVVVVLTPCLETCSVSVVINVLSDPITIGYPMIIRRDAKHVTVLLYPGYLTAKFSIQVHVIHEWSWAGTPNEGAAWLRLQRLGDTWHRILLIPVAGGVIVGVLHGLLEILHQIKQSNPGHDFNLLSGVFPSVKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNKERRIALVAAGAAAGISSGFNAAVAGCFFAIETVLRPQCAENSPPFTTAMIILASVISSTVSSVILGEKQAFSVPTYDLKSAAGILSHSSSINRCCKKNMYVIQNLPTVSYGISSGQWVGLGLEFCIFLAELPLYLILGMLCGVVSVLFTRLVAWFNKAFAYIEETFGLPAIVSPALGGLGAGLIALKYPGILYWGFTNIDEILHTGKTASAPGIWLLAQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAGKLINSAISGNAAIAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVANQSKEAEGSETRSSSRGYSVLSPTDDKTDDWRQNGEDDLELCIMGPGDSHEAIDEDIILEDLKVSQAMSNIYPKVLLSSTVNEAVKCMNDSQQSCVLVVDHEDHLEGILTHGDVKRGIFKTPNGSSDNGPSTSDLSAYLVSSICTQGMNYRGRKRGLLTCYPDTDLAIAKKLMEAKEIKQLPVVQHVVDYQEERKRRVVAILYYHSVWSCLRLRPNSYVLIVLDLKLGFRTPPTFYYCRI 876
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03264 876 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 436 849 IPR050368 GO:0005794(PANTHER)|GO:0009507(PANTHER)
Ceso2g03264 876 MobiDBLite consensus disorder prediction 641 669 - -
Ceso2g03264 876 SUPERFAMILY Clc chloride channel 97 635 IPR014743 -
Ceso2g03264 876 Pfam CBS domain 700 754 IPR000644 -
Ceso2g03264 876 Gene3D - 684 846 IPR046342 -
Ceso2g03264 876 PRINTS Chloride channel signature 543 563 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Ceso2g03264 876 PRINTS Chloride channel signature 319 338 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Ceso2g03264 876 PRINTS Chloride channel signature 268 287 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Ceso2g03264 876 PRINTS Chloride channel signature 584 600 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Ceso2g03264 876 PRINTS Chloride channel signature 602 621 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Ceso2g03264 876 CDD Voltage-gated-ClC 183 629 - -
Ceso2g03264 876 MobiDBLite consensus disorder prediction 1 42 - -
Ceso2g03264 876 Gene3D Clc chloride channel 170 393 - -
Ceso2g03264 876 Gene3D Clc chloride channel 414 648 - -
Ceso2g03264 876 MobiDBLite consensus disorder prediction 641 658 - -
Ceso2g03264 876 SMART cbs-1 707 755 IPR000644 -
Ceso2g03264 876 SMART cbs-1 792 848 IPR000644 -
Ceso2g03264 876 SUPERFAMILY CBS-domain pair 695 820 IPR046342 -
Ceso2g03264 876 ProSiteProfiles CBS domain profile. 704 762 IPR000644 -
Ceso2g03264 876 Pfam Voltage gated chloride channel 254 632 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Ceso2g03264 876 MobiDBLite consensus disorder prediction 13 40 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03264 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr1:97935180 Ceso2g03264 Ceso-Chr2:81841520 dispersed
Ceso Ceso-Chr2:81841520 Ceso4g02812 Ceso-Chr4:58687007 dispersed