AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03283 ATGAAGCTCGTCAGGTTTTTGATGAAGTTGAACAACGAAACAGTCTCGATCGAGCTCAAAAATGGAACGGTTGTACATGGAACCATCACAGGTGTTGATATTAGCATGAACACACACTTGAAGACGGTGAAGTTGACACTGAAAGGGAAAAATCCCGTAACCCTAGATCATTTGAGTGTGAGAGGCAATAACATTCGTTACTATATACTTCCCGACAGCTTGAATTTGGAGACCTTGCTAGTTGAAGAAACACCTCGAGTCAAACCCAAGAAGCCAACTGCAGGTACTTATTTTTCTTCCATGTGTTACCGCTATAGCACTTGTGCTCAATTTTTTTTAAGGAGGCCTGTGGGGCGCGGACGGGGAAGAGGGAGAGGCCGTGGACGTGGGCGTGGGCGTTAG 402 46.02 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGTYFSSMCYRYSTCAQFFLRRPVGRGRGRGRGRGRGRGR 133
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03283 133 Gene3D - 1 49 - -
Ceso2g03283 133 Gene3D - 50 82 - -
Ceso2g03283 133 FunFam Small nuclear ribonucleoprotein Sm D1 1 82 - -
Ceso2g03283 133 SUPERFAMILY Sm-like ribonucleoproteins 4 130 IPR010920 -
Ceso2g03283 133 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 128 IPR027141 GO:0000243(PANTHER)|GO:0000387(PANTHER)|GO:0003723(PANTHER)|GO:0005682(PANTHER)|GO:0005685(PANTHER)|GO:0005686(PANTHER)|GO:0005687(PANTHER)|GO:0005689(PANTHER)|GO:0006396(InterPro)|GO:0034715(PANTHER)|GO:0034719(PANTHER)|GO:0071011(PANTHER)|GO:0071013(PANTHER)|GO:0097526(PANTHER)
Ceso2g03283 133 SMART Sm3 5 70 IPR001163 -
Ceso2g03283 133 CDD Sm-D1 2 93 IPR034102 GO:0000387(InterPro)
Ceso2g03283 133 Pfam LSM domain 5 69 IPR001163 -
Ceso2g03283 133 ProSiteProfiles Sm domain profile. 2 74 IPR047575 GO:0003723(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03283 K11087 small nuclear ribonucleoprotein D1
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:82185273 Ceso6g00165 Ceso-Chr6:1879842 dispersed
Ceso Ceso-Chr2:82178012 Ceso2g03283 Ceso-Chr2:82185273 tandem