AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03285 ATGAAATCGACGACGGCACTGGCTTTCGCTACGATGAATGACTCTGCTTACCGGGTGGATACGACTTCCCGCCTTGCTCAATGGCGAATCGACAACTTGGCGGCTTTTACGTATCGCAAATCGAATCCTTTTAGGATTGGGAAATGGAATTGGCATTTAGCTGTGGAGAAGAATCGAACCTTGTCGATTAAATTATATCCGGAGATATCGAATTTAACTCGAGACGACCCACCGATTGTTTCTTTCATCATTCGGCTCGTCTCTTCGTTCGGAGGTCGCAAGGTTTTGGTCCATCCAGAAATTAGGGATAAACAACTGAAAACTAGCGATGATTTTGTGTGGGTACTCGAGGTTCCATTGACAGGGAAGTTCATCATCGACGTTGAATTTATTGACCTAAAGACCGCATCTCCACATGGCGGTGAATCGTGCTCCATGTGGGCGGAAGGGGAGGCCCAAAAGAAATCGTATGCAACCGCTCTCACCTCCCTTGGCCGAATGTTATCGGAAAGCATTCACACAGATATCATCATCAATGCTTCCGATGGAAGCATTGGGGCCCACCGTGCAGTCCTTGCTGCGCGCTCGCCAGTCTTCCATAGCATGTTCTCCCATGACTTGAAAGAAAAAGAGTTGTCCACCATTAACATTCTCGATATGTCCATTGAATCTTGCCAAGCTTTTCTCAGCTCGTTATACGGTAACATAGCAAACGAAGATTTTCTCACTTATAGGCTCGATCTTCTTAGAGCGGCCGATAAATACAAGTTTTGGACCTAA 780 46.28 MKSTTALAFATMNDSAYRVDTTSRLAQWRIDNLAAFTYRKSNPFRIGKWNWHLAVEKNRTLSIKLYPEISNLTRDDPPIVSFIIRLVSSFGGRKVLVHPEIRDKQLKTSDDFVWVLEVPLTGKFIIDVEFIDLKTASPHGGESCSMWAEGEAQKKSYATALTSLGRMLSESIHTDIIINASDGSIGAHRAVLAARSPVFHSMFSHDLKEKELSTINILDMSIESCQAFLSSLYGNIANEDFLTYRLDLLRAADKYKFWT 259
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03285 259 SMART BTB-4 174 258 IPR000210 GO:0005515(InterPro)
Ceso2g03285 259 Pfam BTB-POZ domain 167 257 IPR000210 GO:0005515(InterPro)
Ceso2g03285 259 ProSiteProfiles BTB domain profile. 174 233 IPR000210 GO:0005515(InterPro)
Ceso2g03285 259 Gene3D Potassium Channel Kv1.1; Chain A 146 258 IPR011333 -
Ceso2g03285 259 CDD BTB-POZ-ZBTB-KLHL-like 173 255 - -
Ceso2g03285 259 PANTHER OS08G0495500 PROTEIN-RELATED 15 256 IPR044714 -
Ceso2g03285 259 SUPERFAMILY POZ domain 159 257 IPR011333 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03285 - -
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ceso BTB 3.2e-17 CL0033 TR TRAF