AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03288 ATGGCGGAAACAGAGACGTTTGCCTTCCAAGCTGAGATCAACCAGCTGTTGAGTCTCATCATCAACACTTTCTACAGCAACAAGGAGATCTTCCTTCGTGAGCTTGTTAGCAACGCCTCCGATGTGAGTTTCTCTCTTTTTCATGTATTTGAAAGCGTTTATGTTCATAGATTCATCGATTTCATGAGATCTGTAAAGATCCATGGCGTCTCGTTGTTAGTAACTGCTCTGGATAAGATTCGTTTTGAGAGCTTGACTGATAAGAGCAAGCTAGATGGCCAACCAGAGCTGTTCATCCACATTATCCCCGATAAGGCCACCAACACGCTGACCATCATTGACAGTGGAATTGGAATGACTAAAGCAGATTTGGTGAATAACCTCGGTACCATTGCTCGATCGGGTACCAAGGAATTCATGGAAGCCATTGCTGCTGGTGCCGATGTTAGCATGATTGGACAATTCGGTGTTGGTTTCTACTCTGCTTATCTAGTCGCCGAGAAAGTCATCGTCACCACAAAACACAACGATGACGAACAGTACGTTTGGGAGTCGCAGGCCGGTGGCTCGTTCACCGTAACCCGTGACGAAGGTGAAGCCCTCGGCAGGGGCACAAAGATCGTCCTTTACCTCAAGGAGGACCAGCTCGAGTACCTCGAGGAACGCCGATTAAAGGATCTAATCAAGAAACACTCCGAGTTCATCAGCTACCCGATCTCCCTCTGGGTCGAGAAGACCACCGAGAAGGAAATATCCGACGACGAAGATGAAGAGGAGAAGAAAGACGAAGAAGAAAAGAAAGACGAAGAAGGCAAAGTTGAGGAGGTCGACGAAGAGAACGAGAAGGAAGAGAAGAAAAAGAAGAAGATTAAGGAAGTGTCCCACGAATGGTCGTTGATGAACAAGCAAAAACCGATCTGGATGAGGAAACCAGAAGAAATCACTAAAGAAGAGTATGCTGCTTTCTACAAAAGCCTAACCAACGATTGGGAGGAGCACTTGAACGTTAAGCACTTCTCGGTTGAAGGACAGTTGGAATTCAAGGCAGTCCTTTTCGTCCCGAAACGTGCCCCCTTTGACTTGTTTGACTCGAAGAAGAAGCCCAACAACATCAAGCTTTACGTCCGTCGTGTCTTCATCATGGACAACTGTGAAGAGATCATCCCCGAATACCTTAGCTTCGTCAAGGGTATCGTCGACTCCGAGGATCTTCCCCTGAACATTTCCCGAGAAATGTTGCAGCAAAACAAGATCTTGAAGGTTATCCGCAAGAATTTGGTGAAGAAATGCATCGAGCTTTTCCAAGAGATTGCAGAGAACAAGGAGGATTACGTCAAGTTCTACGAAGCCTTCTCGAAGAACCTCAAACTCGGCATCCACGAAGACTCGACCAACAAGACCAAACTCGCGGAATTGTTACGTTACCACTCGACCAAAAGCGGTGATGAGATGACGAGTTTGAAAGACTACGTCACCCGAATGAAAGACGGCCAAACCGACATCTTTTACATCACCGGCGAGAGCAAAAAAGCCGTCGAGAACTCCCCGTTCCTTGAGAAGTTGAAAAAGAAAGGATACGAGGTTCTTTACATGGTTGACGCGATCGACGAGTACTCCGTCGGCCAGCTGAAGGAATTCGAGGGCAAAAAGCTCGTTTCCGCCACCAAAGAGGGTCTTAAACTCGAGGAAACCGAAGACGAGAAGGCGAACCAGGAACGTCTGAAGGAGAAATTCGAGGGTCTGTGCAAGGTGATCAAGGACGTTTTGGGCGACAAGGTCGAGAAGGTGGTGGTGTCCGACCGTGTGGTGGACTCGCCGTGCTGTCTGGTGACGGGCGAGTACGGGTGGACGGCCAACATGGAGCGGATCATGAAGGCGCAGGCCCTACGTGATGCGAGCATGGCCGGATACATGTCGAGCAAGAAGACGATGGAGATCAACCCGGAGAACGCCATCATGGAGGACCTGGATGAGCCAAACACATTTGGGAACAGGATTCATAGGATGTTGAAGCTGGGGTTGAGCATTGAGGATGATGGTGTTGAAGGTGATGGTGATATCCCTGCTCTTGAGGAAGCTGAAATTGATGCTGAAGGCAGTAAGATGGAGGAAGTTGACTAA 2121 48.47 MAETETFAFQAEINQLLSLIINTFYSNKEIFLRELVSNASDVSFSLFHVFESVYVHRFIDFMRSVKIHGVSLLVTALDKIRFESLTDKSKLDGQPELFIHIIPDKATNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDEGEALGRGTKIVLYLKEDQLEYLEERRLKDLIKKHSEFISYPISLWVEKTTEKEISDDEDEEEKKDEEEKKDEEGKVEEVDEENEKEEKKKKKIKEVSHEWSLMNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLNVKHFSVEGQLEFKAVLFVPKRAPFDLFDSKKKPNNIKLYVRRVFIMDNCEEIIPEYLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCIELFQEIAENKEDYVKFYEAFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDEMTSLKDYVTRMKDGQTDIFYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYSVGQLKEFEGKKLVSATKEGLKLEETEDEKANQERLKEKFEGLCKVIKDVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDASMAGYMSSKKTMEINPENAIMEDLDEPNTFGNRIHRMLKLGLSIEDDGVEGDGDIPALEEAEIDAEGSKMEEVD 706
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03288 706 FunFam Heat shock protein 90 alpha 557 658 - -
Ceso2g03288 706 SUPERFAMILY Ribosomal protein S5 domain 2-like 302 557 IPR020568 -
Ceso2g03288 706 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 76 246 IPR036890 -
Ceso2g03288 706 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 4 42 IPR036890 -
Ceso2g03288 706 Coils Coil 561 581 - -
Ceso2g03288 706 PRINTS 90kDa heat shock protein signature 5 25 IPR020575 -
Ceso2g03288 706 PRINTS 90kDa heat shock protein signature 26 48 IPR020575 -
Ceso2g03288 706 PRINTS 90kDa heat shock protein signature 221 239 IPR020575 -
Ceso2g03288 706 ProSitePatterns Heat shock hsp90 proteins family signature. 25 34 IPR019805 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Ceso2g03288 706 Gene3D - 557 659 IPR037196 -
Ceso2g03288 706 Gene3D - 470 556 - -
Ceso2g03288 706 PIRSF HSP90-HTPG 1 43 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Ceso2g03288 706 PIRSF HSP90-HTPG 74 669 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Ceso2g03288 706 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 101 179 - -
Ceso2g03288 706 Gene3D - 301 469 - -
Ceso2g03288 706 SUPERFAMILY HSP90 C-terminal domain 581 670 IPR037196 -
Ceso2g03288 706 FunFam Heat shock protein 90 alpha 470 556 - -
Ceso2g03288 706 MobiDBLite consensus disorder prediction 250 277 - -
Ceso2g03288 706 Pfam Hsp90 protein 217 657 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Ceso2g03288 706 CDD HATPase-Hsp90-like 14 235 IPR020575 -
Ceso2g03288 706 Gene3D - 1 259 IPR036890 -
Ceso2g03288 706 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 3 657 IPR001404 GO:0005524(InterPro)|GO:0005829(PANTHER)|GO:0005886(PANTHER)|GO:0006457(InterPro)|GO:0006457(PANTHER)|GO:0016887(InterPro)|GO:0032991(PANTHER)|GO:0034605(PANTHER)|GO:0048471(PANTHER)|GO:0050821(PANTHER)|GO:0051082(PANTHER)|GO:0051082(InterPro)|GO:0140662(InterPro)
Ceso2g03288 706 FunFam Heat shock protein 90 alpha 301 469 - -
Ceso2g03288 706 MobiDBLite consensus disorder prediction 248 287 - -
Ceso2g03288 706 MobiDBLite consensus disorder prediction 683 706 - -
Ceso2g03288 706 Hamap Chaperone protein HtpG [htpG]. 2 696 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Ceso2g03288 706 Coils Coil 259 296 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03288 K04079 molecular chaperone HtpG
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr1:103316197 Ceso2g03288 Ceso-Chr2:82412015 dispersed
Ceso Ceso-Chr2:82412015 Ceso7g00066 Ceso-Chr7:774623 dispersed
Ceso Ceso-Chr2:82412015 Ceso4g01705 Ceso-Chr4:30356293 wgd