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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03376 ATGGTGACCCTGCCGGGAGTGGTCGAGATCCTGGCCAATGTGGTGCCGGTCACTTCGGAAGACGACAAGATCCACGGGTACAAGGTGCCGTCCGATGACTGCTTTGCGCATTTGGAGGTTCAGTTTCGGTTTTCGGGGCTTTCGGACGAGGTGGAAGGGGTGTTGGGAAGGACGTACAGGCCGGATTTCGAGAATCCTGCGAAGCCAGGTGTCGCGATGGCTGTGGTCGGAGGAGAAGACAGGTACCGGACCACGGATCTTTTGGCTGCGGATTGCGCCACATGTATGTTCGATTCGAGCAAAGGGGAGCAGAAGAAGAAGATGGTGAAGGAGTATGGAACTTTGGATTGCTCAGCCAAGGGATTGTTCCATGGAAATGGGATTGTTTGCAAGAAGTGA 399 54.64 MVTLPGVVEILANVVPVTSEDDKIHGYKVPSDDCFAHLEVQFRFSGLSDEVEGVLGRTYRPDFENPAKPGVAMAVVGGEDRYRTTDLLAADCATCMFDSSKGEQKKKMVKEYGTLDCSAKGLFHGNGIVCKK 132
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03376 132 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 2 132 - -
Ceso2g03376 132 Pfam Root cap 41 97 IPR009646 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03376 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:83944228 Ceso2g03378 Ceso-Chr2:83987199 dispersed
Ceso Ceso-Chr2:83815232 Ceso2g03376 Ceso-Chr2:83944228 proximal
Ceso Ceso-Chr2:83944228 Ceso2g03377 Ceso-Chr2:83970063 tandem
Ceso Ceso-Chr2:83944228 Ceso2g03693 Ceso-Chr2:90778222 wgd