AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03414 ATGTCCACCAAACAATGGATTCTGCACGGCGTCGCCGCCGCCGCCCTAGCCGTCGGTGCTCACGCTTACTTCTATTACCGCCGATCCGCCTTTCGGAGTCGAGTGATCGGCATAATTCCGGCCAGGTTCGCTTCTTCTCGGTTCCAGGGCAAACCACTGGTTGATATCCTTGGCAAACCTATGATTCAGAGAACCTGGGAAAGAGCAAAGTTGGCAACAACATTGGACCGTGTTGTTGTGGCAACGGATGATGAAAAGATTGCAGAGTGCTGTAGGGGATTTGGTGCTGATGTGATAATGACGGCAGAATCCTGCAGAAATGGTGCTGAGAGGTGTAGTGAAGCACTTCAAAAGCTCGATAAGAAGTACGATATTGTTGTCAATATCCAAGGAGACGAACCTCTTATCGAGCCTGAAATAATCGATGGGATTGTCAAAGCTCTTCAGACCAGCCCAGATGCAGTTTTCAGCACGGCAGTCACTGCTTTGAAACCCGAAGATGCTTTTGATCCAAATCGTGTGAAATGTGTGGTTGACAACCGTGGTTATGCAATCTACTTTTCTCGAGGGCTGATCCCTTTTAACAAATCGGGGAAGACCAATCCTGAATTCCCATATAATCTTCATCTTGGCATTCAGAGCTATGATTCGGAGTTTTTGAAAATTTATCCGGACCTTACACCAACTCCGTTGCAACTAGAAGAAGATTTGGAACAACTTAAAGTTCTTGAAAATGGATACAAGATGAAGGTAATAAAAGTGGATCATGATGCTCATGGTGTGGATACTCCTGAAGATGTTGCCAAGATTGAAAATTATATGAGGGAAAGGAACTTGTCTTAA 843 45.2 MSTKQWILHGVAAAALAVGAHAYFYYRRSAFRSRVIGIIPARFASSRFQGKPLVDILGKPMIQRTWERAKLATTLDRVVVATDDEKIAECCRGFGADVIMTAESCRNGAERCSEALQKLDKKYDIVVNIQGDEPLIEPEIIDGIVKALQTSPDAVFSTAVTALKPEDAFDPNRVKCVVDNRGYAIYFSRGLIPFNKSGKTNPEFPYNLHLGIQSYDSEFLKIYPDLTPTPLQLEEDLEQLKVLENGYKMKVIKVDHDAHGVDTPEDVAKIENYMRERNLS 280
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03414 280 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 24 275 IPR029044 -
Ceso2g03414 280 CDD CMP-KDO-Synthetase 34 273 IPR004528 GO:0008690(InterPro)
Ceso2g03414 280 Pfam Cytidylyltransferase 36 248 IPR003329 -
Ceso2g03414 280 Hamap 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 33 275 IPR004528 GO:0008690(InterPro)
Ceso2g03414 280 SUPERFAMILY Nucleotide-diphospho-sugar transferases 35 277 IPR029044 -
Ceso2g03414 280 NCBIfam 3-deoxy-manno-octulosonate cytidylyltransferase 38 267 IPR004528 GO:0008690(InterPro)
Ceso2g03414 280 PANTHER 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE 3 279 - GO:0005829(PANTHER)|GO:0008690(PANTHER)
Ceso2g03414 280 FunFam 3-deoxy-manno-octulosonate cytidylyltransferase 33 275 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03414 K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
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Event-related genes

Select Gene_1 Gene_2 Event_name
40421 Ceso2g03414 Ceso8g00973
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr1:47398644 Ceso2g03414 Ceso-Chr2:84593429 transposed
Ceso Ceso-Chr2:84593429 Ceso8g00973 Ceso-Chr8:12659249 wgd