AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03415 ATGGCCGGCGTTCTCGAAACCCTCGCCGTTCCTCGTGCCTCCCTAACTCCGATCGCTCTTTCTCCGATCTCTCACCTCTCACTTCGCCGGACCTCCTTTCTGCCGGAATCCAAAGCCTTCAACTCAACCATCACTTCCTTCCGATCGTCTGGATCTGTTAAATTGAGGTCGAACTCCGGCCGTCGTCTTGGTGGACGAATCGTCTGTGAAGCTCAGGATACAGCTGTTGAAGTACTTCCCGTAACTGATGACTCATGGGAATCACTTGTCCTTAAATCTACTCTTCCCGTACTGGTTGAGTTTTGGGCTCCGTGGTGTGGGCCCTGCCGCATGATCCACCCCGTCATCGATGAACTTGCAAAAGACTACAAGGGCAAGCTCACTTGTTACAAGGTAAATACCGATGAGAGCCCTTCGATTGCTACCAAATACGGGATAAGAAGCATCCCTACGGTTATGGTGTTCAAAGATGGTGAGAAGAAGGATGCAGTTATTGGTGCAGTTCCCAAATCAACCCTGGCTACCTGCATCGATAAGTTCTGTTAG 546 50.55 MAGVLETLAVPRASLTPIALSPISHLSLRRTSFLPESKAFNSTITSFRSSGSVKLRSNSGRRLGGRIVCEAQDTAVEVLPVTDDSWESLVLKSTLPVLVEFWAPWCGPCRMIHPVIDELAKDYKGKLTCYKVNTDESPSIATKYGIRSIPTVMVFKDGEKKDAVIGAVPKSTLATCIDKFC 181
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03415 181 PRINTS Thioredoxin family signature 97 105 - -
Ceso2g03415 181 PRINTS Thioredoxin family signature 105 114 - -
Ceso2g03415 181 PRINTS Thioredoxin family signature 145 156 - -
Ceso2g03415 181 ProSiteProfiles Thioredoxin domain profile. 33 181 IPR013766 -
Ceso2g03415 181 FunFam Thioredoxin 72 181 - -
Ceso2g03415 181 Pfam Thioredoxin 78 178 IPR013766 -
Ceso2g03415 181 SUPERFAMILY Thioredoxin-like 75 179 IPR036249 -
Ceso2g03415 181 CDD TRX-family 84 173 - -
Ceso2g03415 181 Gene3D Glutaredoxin 77 181 - -
Ceso2g03415 181 PANTHER GEO12009P1 55 180 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Ceso2g03415 181 NCBIfam thioredoxin 82 179 IPR005746 GO:0015035(InterPro)
Ceso2g03415 181 ProSitePatterns Thioredoxin family active site. 98 116 IPR017937 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03415 K03671 thioredoxin
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:84599961 Ceso8g01173 Ceso-Chr8:17085070 dispersed
Ceso Ceso-Chr2:84599961 Ceso2g00951 Ceso-Chr2:16637225 transposed