AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03433 ATGATCTGTCTACCTCTTCTCCCCAAAACCCCTATTGGATCCCAAACCCAAGTGTTCAGATTCTTATCAACAACCACCACCACCCAATTTGTTCATCTTCATCAGGGTCGTAAATATTCGAAAAGTATTGATATTGGTCACAGGAAGAATAAAAATTATGAGTATAATTGGGGCTATTGTTGTCCTTGTTCGAATTCGGGTTCTTTCGATTCGAGCGAAGAGGAATTCGATATGGAATTGGGACGGCTGTTGAGGCTGTTGCCGGAGGAGATGCGGCGGAGGGTTAACGAGCACGAAGAGCTTCATCAGCTGATTGAGGTTGTTATGGATTTGGGTCGGAAACCGTTGGCTCGGTTTCCGTCTGGGGATTTTGTGTTATCGGATCATTTGATCACGGTGGATGATCTCTTACACGCTACTTCATTGGTAGGTGATTTTGCTATTGATAATCGAGCCGGCATTAGCAGAACTTTGCACCGAATTAGTGCCATCAGAAACCGGAAGGCTGCAATTATTGGGTTAACCTGTCGTGTTGGTCGAGCTGTATCAGGAAGTGCCAAATTATTGCAAGATTTGGTTAAAGATGGATCGTCTTTATTGCTTATTGGACCTCCAGGAGTTGGAAAAACTACAATTATCAGGGACATAGCTCGAATGCTTGCAAATGATTATAAGAAACGTGTCATGATTGTTGACACCTCGAATGAAATTGGTGGAGATGGCGATATACCTCACGCAGGTATAGGTAATGCTCGACGGATGCAAGTTCCTGATTCTGATATGCAACATAAGGTGTTAATAGAAGCAGTCGAAAATCATATGCCTCAAGTGATTGTAATTGATGAAATCGGCACGAAACTTGAAGCAGCAGCTGCAAGCACCATTGCACAACGTGGGATTCAGTTAGTTGCAACTGCTCATGGTATTACAATAGAGAATTTGGTGATGAATCCTTCCTTGGAGATGCTTGTTGGAGGAATACAGAGTGTGACGTTAGGAGATGAAGAGGCAAACCGAAGGGGCGTGCAGAAATCAGTGCTGGAGAGAAAAGGTCCATCCACTTTTGATTGTGCCGTGGAGATCATTTCTAGGGTTGAGTTGAGAGTTCATAGTAGCCTGGAAGCAACCGTTGATGCGATTCTTTCTGGCCGTTCCCCAAAATATCAAGTTTGCAAGTTAAATCAGGGAGAGGTAGATATTACTCTACAAAATGATCCCATTGCACACGATTCGTTTGTCAAGAAGAGTGTCACCACAATTGAAGGCATTCCACAATGGACCGATGAAAAGCTTACCTCTGACAAACACATTTCTAAAGAGTCTCAAAGCGAGAAAGAGAATTCTTATGACAAGCCACCCTTGTGTTTATTCCTTTACGGGGTTTCAGAGACAATGGCAATACAAGTATTCAAAAACTTAAAGATGGACTCTGCTGTTGAATTTACGGAGAATATTAGTGAAGCAGATGCAATAGTTGCACTATTGTCCAAAATCAGGAAAAATTCCCGGATTCAAGCTGCTGCTCACTCTAACGACATACCTATTTATGTGACAAAAACAAGCTCGTTGACGCAGTTAACAAAGGCCATAGAGTCATTAGTGACTGATTATGATAATGGTTTTGAAGATATTGAAGATGAAACTCAGATAAATGAATCAGAGAAGACAGATGCTTTGGAGGAGGTGAGGATTGCCATTGAGCAGGTTGTTATCCCAAAAGGGCAACCTGTAGAATTACTTCCTAGACCATCCAGCATTATGTTGCTTCAGAAGGATCTCATTCATAAATACAAACTACAAGCAGAACAAGTTGGTTCAGATGTAGATGTAAGGCTTCTTATCCTACCATATCAAGGTAACAAACAAGATAAAAATCCTGGTGAAACAAGTGATGATGAAGATGAAGATGAAGATGAAGATGGTGAAATTAGTGAGTTATCTGAAACAAATGGCTCAGCCTACCCAATGGATAGAGGTTCTGAATCCCGCATTCTTATTGGTTCGTTATCTTCCAAGAACAATGGAGGGTCGTTAATCGAGAGGGCCGAAGAGATTATTGAG 2061 41.78 MICLPLLPKTPIGSQTQVFRFLSTTTTTQFVHLHQGRKYSKSIDIGHRKNKNYEYNWGYCCPCSNSGSFDSSEEEFDMELGRLLRLLPEEMRRRVNEHEELHQLIEVVMDLGRKPLARFPSGDFVLSDHLITVDDLLHATSLVGDFAIDNRAGISRTLHRISAIRNRKAAIIGLTCRVGRAVSGSAKLLQDLVKDGSSLLLIGPPGVGKTTIIRDIARMLANDYKKRVMIVDTSNEIGGDGDIPHAGIGNARRMQVPDSDMQHKVLIEAVENHMPQVIVIDEIGTKLEAAAASTIAQRGIQLVATAHGITIENLVMNPSLEMLVGGIQSVTLGDEEANRRGVQKSVLERKGPSTFDCAVEIISRVELRVHSSLEATVDAILSGRSPKYQVCKLNQGEVDITLQNDPIAHDSFVKKSVTTIEGIPQWTDEKLTSDKHISKESQSEKENSYDKPPLCLFLYGVSETMAIQVFKNLKMDSAVEFTENISEADAIVALLSKIRKNSRIQAAAHSNDIPIYVTKTSSLTQLTKAIESLVTDYDNGFEDIEDETQINESEKTDALEEVRIAIEQVVIPKGQPVELLPRPSSIMLLQKDLIHKYKLQAEQVGSDVDVRLLILPYQGNKQDKNPGETSDDEDEDEDEDGEISELSETNGSAYPMDRGSESRILIGSLSSKNNGGSLIERAEEIIE 687
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03433 687 Pfam Sporulation stage III, protein AA 171 325 IPR045735 -
Ceso2g03433 687 SMART AAA-5 195 326 IPR003593 GO:0016887(InterPro)
Ceso2g03433 687 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 561 579 - -
Ceso2g03433 687 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 203 222 - -
Ceso2g03433 687 CDD R3H-AAA 557 616 IPR034081 -
Ceso2g03433 687 MobiDBLite consensus disorder prediction 629 645 - -
Ceso2g03433 687 CDD AAA 196 285 - -
Ceso2g03433 687 PANTHER KINASE-RELATED 72 579 - GO:0009507(PANTHER)
Ceso2g03433 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 338 IPR027417 -
Ceso2g03433 687 MobiDBLite consensus disorder prediction 619 687 - -
Ceso2g03433 687 Gene3D - 176 340 IPR027417 -
Ceso2g03433 687 FunFam uncharacterized protein ycf45 isoform X2 160 377 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03433 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr1:92505467 Ceso2g03433 Ceso-Chr2:84965378 dispersed
Ceso Ceso-Chr2:84965378 Ceso6g02585 Ceso-Chr6:68773037 dispersed