AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03453 ATGGGAATAACGAAGATCAAGATCTCTAAATCTTTATCCTTCCTTGCTCTAAACATTTCTGGTACAAAATACCATAATTATCACCAACCATGGCTTCTTCTGCCTCTTCATCTCTTATTATCTTCTTTTGCTTCTTGTTTACACTCTTGTTCATCTCCCAAGCCACTGTTCCTCCCTCCGAAACCTTCCGATACATTAACGAAGGCGCTTTCAGCCATTCCGTTTGAAAGATCAACCGAATACGACCCAACCTACCGTTCTCTTGAACTGTTCACCAGCCCTTTCCGCCTCGCTTTCTACAACACCACCCCAAACGCCTACACACTCGCTCTTCGCATGGGCATCCGCGGTGACCGATCCCTCGTGCGTTTCGTTTGGGAGGCCAACCGCGGGAATCCCGTTCGCGAAAACGCCACTCTCTCGTTCGGATCCGACGGAAACCTCATCCTGGCCGAGGCCGACAGCCGGATCGCATGGCAGCCCAACAACGCCCATAAGGGCGGTGTTGGGTTCGCCATACTCCCCAACGGCAACATCGTGCTCCGCGATGCTGCCGGTGGTTTCGTCTGGCAGAGCTTCGATTACCCGACCGACACACTTAGCCTCCGTGTCGGAGGCTCCAACAAGCTCGTGAGCAGGGCCTCCGTGACGGAGAACGTCAACGGCGATTATAGCCTCGTGTTAGAGCCTAAACGGCTGGCTTTGTACTGCAAGAAGACGATGCGTTACTGGTCGTTCGCCGAAGTCAACAACGGCAATGGGGATTTGCTGAATGCAACATTAGAAATGGGGGAAGCCGAATACGTCGACAGCAATTTTAACGCGCTCCGTTATCGCCAATTTGCAGTTTCGAGCGCGTGGAGATTGTTGTATACATTGTTCAAAAGACGGGTGAACGAATGGGGGGAAGCGGATGTCGAAGACGAGTGCCAATTGCCCGATCGGTGTGGGAAGTTTGGGCTTTGCGAGGACAGCCAATGCGTAGGGTGCCCGTCTCCGAACGGGGTTTTTGCGTGGAGCAAAGATTGTGTTGCGAAGTTGCGAGGATGTGAGGCGGATAGTTTTCGTTATTACGAGCTTAAAGGGGTGGACCATTTCACGGTGAAATACGGTACCGGGTTGGGCCCGGTGAGTCGGGCAGGGTGCGAGAGTAAATGCACCAAGGATTGCAAGTGCTTGGGGTATTTCTATCGTACGGATAGATCGAGGTGTTGGATTGCTCACGAGCTGAAAACGTTGACAAGGGTCGGGAACTCGACTCATATGGCGTACATTAAGACGCCACTTGGCTAA 1293 52.36 MGITKIKISKSLSFLALNISGTKYHNYHQPWLLLPLHLLLSSFASCLHSCSSPKPLFLPPKPSDTLTKALSAIPFERSTEYDPTYRSLELFTSPFRLAFYNTTPNAYTLALRMGIRGDRSLVRFVWEANRGNPVRENATLSFGSDGNLILAEADSRIAWQPNNAHKGGVGFAILPNGNIVLRDAAGGFVWQSFDYPTDTLSLRVGGSNKLVSRASVTENVNGDYSLVLEPKRLALYCKKTMRYWSFAEVNNGNGDLLNATLEMGEAEYVDSNFNALRYRQFAVSSAWRLLYTLFKRRVNEWGEADVEDECQLPDRCGKFGLCEDSQCVGCPSPNGVFAWSKDCVAKLRGCEADSFRYYELKGVDHFTVKYGTGLGPVSRAGCESKCTKDCKCLGYFYRTDRSRCWIAHELKTLTRVGNSTHMAYIKTPLG 430
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03453 430 SMART blect-4 79 196 IPR001480 -
Ceso2g03453 430 CDD B-lectin 79 196 IPR001480 -
Ceso2g03453 430 CDD PAN-AP-plant 353 428 - -
Ceso2g03453 430 SUPERFAMILY alpha-D-mannose-specific plant lectins 120 246 IPR036426 -
Ceso2g03453 430 Gene3D - 91 193 IPR036426 -
Ceso2g03453 430 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 93 427 IPR051343 -
Ceso2g03453 430 ProSiteProfiles Bulb-type lectin domain profile. 75 194 IPR001480 -
Ceso2g03453 430 Pfam D-mannose binding lectin 124 200 IPR001480 -
Ceso2g03453 430 PIRSF SLG 34 430 IPR035446 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03453 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:85362730 Ceso2g03455 Ceso-Chr2:85375600 dispersed
Ceso Ceso-Chr2:85362730 Ceso2g03454 Ceso-Chr2:85367787 tandem
Ceso Ceso-Chr1:50231616 Ceso2g03453 Ceso-Chr2:85362730 wgd
Ceso Ceso-Chr2:85362730 Ceso4g03517 Ceso-Chr4:78217599 wgd