AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03454 ATGGCTTCTACTTCTTCGTCTCTTATTATCTTCTTTTGCTTCTTGTTTACACTCTTGTTCATCTCCCAAGCCACTGTTCCTCCCTCCGAAACTTTCCGATACGTTAACGAAGGCGAATTCGGCGATTCCGTTGAAAGATCAACCGAATACGACGCATCCTACCGTTCTCTTCCGCTATTCACCACCCCTTTCCGCCTCGCTTTCTACAACACCACCCCCAACGCCTACACTCTCGGTCTTCGCATGGGAATCCGCGGTGACCGATCCCTCGTGCGTTTCGTCTGGGACGCCAACCGCGGGAATCCCGTTCGCGAAAACGCCACTCTCTCGTTCGGATCCGACGGAAACCTCGTCTTGGCCGAGGCCGACGGCCGGATCAAATGGCAGACCAACACCGCCAATAAGGGCGTCGTTGGGTTCGCCATACTCCCGACGGCAACATCGTGCTCCGCGATGCTGCCGGTGGTTTTGTCTGGCAAAGCTTTGATTACCCAACCGACACCCTCTTGTTCGGTCAGAGCCTCCGTGTCGGAGGCCCCAATAAGCTCGTGA 552 55.43 MASTSSSLIIFFCFLFTLLFISQATVPPSETFRYVNEGEFGDSVERSTEYDASYRSLPLFTTPFRLAFYNTTPNAYTLGLRMGIRGDRSLVRFVWDANRGNPVRENATLSFGSDGNLVLAEADGRIKWQTNTANKGVVGFAILPTATSCSAMLPVVLSGKALITQPTPSCSVRASVSEAPISS 183
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03454 183 ProSiteProfiles Bulb-type lectin domain profile. 42 176 IPR001480 -
Ceso2g03454 183 Gene3D - 63 149 IPR036426 -
Ceso2g03454 183 SMART blect-4 48 170 IPR001480 -
Ceso2g03454 183 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 143 IPR036426 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03454 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:85367787 Ceso2g03461 Ceso-Chr2:85400858 dispersed
Ceso Ceso-Chr2:85362730 Ceso2g03454 Ceso-Chr2:85367787 tandem
Ceso Ceso-Chr2:85367787 Ceso2g03455 Ceso-Chr2:85375600 tandem