AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso2g03461 ATGGCGGCTGCTTCTTCTTCTTCTTCATCTGTTTTCTTTATCTTCTTCTTGTTTTTTTTCTTGTTCATCTCCGAAGCCACCGTTCCTCCCTCCGCCACCTTCCATTACGTTAACTCCGGCGAACTCGAAGATACTAACGAAATATTTACGGAATACGACCCAGACTACCGCTTTCTTCCGCCATTCGCAACTCCTTTCGACCTCTGTTTCTACAACACCACCCCCAATGCCTACATTCTCGCCCTTCGCATGGGCAGACAGTCTGACCGATCCCTAAAACGCTGGGTCTGGGAAGCCAACCGTGGACGCCCCGTTGGAGACAACGCGGCTTTGTCCTTCGGATCCGACGGAAACCTCGTGCTGACCGATGCCGACGGCCAGATCGCATGGCAGACCAACACCGCCAACAAGGGCGTCGTTGGGTTCGCCATCCTCCCCAACGGCAACATCGTGCTTCGCGATGCTGCCGGTCGTTTCGTCTGGCAGAGCTTCGATTACCCGACCGACACCCTCTTGTACGGTCAGAGCCTCCGTGTCGGAGGCCCCAATTATAAGCTCGTCAGCAGGGCCTCCGCCACGGAGAACGTGGACGGCAATTACAGCTTCGTGTTGGAGCCCGAACGGTTGGCTTTGTATTACAAGAAGACGATGCTTTACTGGTCGTCCACGTTCCCTGAGGTGAACAAGGCCAGCAGGGGTTTGGTTAACGCGACGTTGGAGATCACAGAGGCGGAATACAGCGACGGAAATTACAACTCGCTCCGGTTTCGTTTGGCCAACGCCTCTGACCAACCGACTGTGTTACTCGGTACAAACAGATACAATAGCACGTTTTCGTATCTCCGATTGGGGATCGACGGGAACCTAAGGCTGTACGGGTATCGTAGAGTGGCAAATGCGGTCGCGTGGAGCCTGTTGTACACCTGGTTCAATAGAGATTGGAGAAACTCGTTGGAGGGAATCGAGGACGAGTGCCAATTACCCGGTCGTTGCGGGAAGTTTGGGCTTTGCGAGGACAGCCAGTGCGTCGGGTGCCCGACGCCCAAGGGCGTTTATGCGTGGAGCAAAGATTGCGTTGCCAAGTCGCCGGGATGTCAGGCGAGTGGTTTCCGTTATTACGAGGTCAAAGGGGTGGACCATTTTACGGTGAAATACAGTTCCGGGATGGGCCCGGTGGATCGGAAGGTTTGCGAGAGCAAATGCACCAAGGATTGCAAGTGTTTGGGGTATTTCTATCATACAGACCAATCGAGGTGTTGGATTGCTTACGAGCTGAAAACGTTGACGAGGGTTGGGAACTCAACTCATATTGCATACATTAAGACACCCGTATAA 1335 53.63 MAAASSSSSSVFFIFFLFFFLFISEATVPPSATFHYVNSGELEDTNEIFTEYDPDYRFLPPFATPFDLCFYNTTPNAYILALRMGRQSDRSLKRWVWEANRGRPVGDNAALSFGSDGNLVLTDADGQIAWQTNTANKGVVGFAILPNGNIVLRDAAGRFVWQSFDYPTDTLLYGQSLRVGGPNYKLVSRASATENVDGNYSFVLEPERLALYYKKTMLYWSSTFPEVNKASRGLVNATLEITEAEYSDGNYNSLRFRLANASDQPTVLLGTNRYNSTFSYLRLGIDGNLRLYGYRRVANAVAWSLLYTWFNRDWRNSLEGIEDECQLPGRCGKFGLCEDSQCVGCPTPKGVYAWSKDCVAKSPGCQASGFRYYEVKGVDHFTVKYSSGMGPVDRKVCESKCTKDCKCLGYFYHTDQSRCWIAYELKTLTRVGNSTHIAYIKTPV 444
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso2g03461 444 Gene3D - 65 165 IPR036426 -
Ceso2g03461 444 SUPERFAMILY alpha-D-mannose-specific plant lectins 91 222 IPR036426 -
Ceso2g03461 444 CDD B-lectin 50 167 IPR001480 -
Ceso2g03461 444 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 65 442 IPR051343 -
Ceso2g03461 444 Pfam D-mannose binding lectin 96 179 IPR001480 -
Ceso2g03461 444 ProSiteProfiles Bulb-type lectin domain profile. 34 165 IPR001480 -
Ceso2g03461 444 SMART blect-4 50 167 IPR001480 -
Ceso2g03461 444 PIRSF SLG 1 444 IPR035446 -
Ceso2g03461 444 CDD PAN-AP-plant 368 443 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso2g03461 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr2:85367787 Ceso2g03461 Ceso-Chr2:85400858 dispersed
Ceso Ceso-Chr2:85375600 Ceso2g03461 Ceso-Chr2:85400858 dispersed
Ceso Ceso-Chr2:85387451 Ceso2g03461 Ceso-Chr2:85400858 dispersed
Ceso Ceso-Chr2:85389357 Ceso2g03461 Ceso-Chr2:85400858 dispersed
Ceso Ceso-Chr2:85400858 Ceso2g00777 Ceso-Chr2:12267785 dispersed
Ceso Ceso-Chr2:85392900 Ceso2g03461 Ceso-Chr2:85400858 proximal
Ceso Ceso-Chr2:85396352 Ceso2g03461 Ceso-Chr2:85400858 tandem
Ceso Ceso-Chr2:85400858 Ceso2g03462 Ceso-Chr2:85411657 tandem