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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ceso4g04253 ATGCTGGATTTCGATACCACAGAGATGGTTGAAAGTATGAAGAGTGTTGCAAAACTCAACGTAGAACTTACTGTTGAAGAGCGCAACCTCCTATCAGTTGGATACAAGAATGTGATTGGTGCAAGGCGGGCATCTTGGCGTATTATGTCATCAATTGAACAAAAGGAGGAATCGAAAGGAAATGAAAGCAATGTCAACCTGATTAAGGGTTATCGCAAAAAGGTCGAGGATGAACTTGCCAAAATTTGCAGTGACATTCTCGAGATCATAGATAAGCATCTCATACCCTCTTCTGGCTCAGGAGAAGCTACTGTTTTCTACTACAAGATGAAAGGTGACTACTTTCGGTACCTTGCTGAGTTCAAGACGGACCAGGAAAGGAAGGATGCTGCTGAACAGTCATTGAAGGGCTATGAGGCATCAAAGGATCATGCTGCTTCTGCTGCTGCAAATACAGAACTTCCTTCGACCCACCCAATCCGTCTTGGTCTGGCACTCAATTTCTCGGTTTTCTACTACGAGATTATGAATTCTCCCGAGAGGGCTTGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCTGAGTTGGACTCTTTAAGTGAGGAATCCTACAAAGACAGCACTTTGATCATGCAGCTCTTGAGAGATAATCTCACTCTTTGGACCTCTGATTTACCAGAAGATGGAGGTGATGAAAACCATCCCAAAGGCGAAGAATCGAAATCAGCTGAACCAGAGGTTAGTTAG 750 43.73 MLDFDTTEMVESMKSVAKLNVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNESNVNLIKGYRKKVEDELAKICSDILEIIDKHLIPSSGSGEATVFYYKMKGDYFRYLAEFKTDQERKDAAEQSLKGYEASKDHAASAAANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDENHPKGEESKSAEPEVS 249
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ceso4g04253 249 PRINTS 14-3-3 protein zeta signature 71 95 IPR000308 -
Ceso4g04253 249 PRINTS 14-3-3 protein zeta signature 169 195 IPR000308 -
Ceso4g04253 249 PRINTS 14-3-3 protein zeta signature 196 225 IPR000308 -
Ceso4g04253 249 PRINTS 14-3-3 protein zeta signature 102 124 IPR000308 -
Ceso4g04253 249 PRINTS 14-3-3 protein zeta signature 22 51 IPR000308 -
Ceso4g04253 249 MobiDBLite consensus disorder prediction 228 249 - -
Ceso4g04253 249 Coils Coil 183 203 - -
Ceso4g04253 249 PIRSF 14-3-3 5 235 IPR000308 -
Ceso4g04253 249 SUPERFAMILY 14-3-3 protein 10 230 IPR036815 -
Ceso4g04253 249 ProSitePatterns 14-3-3 proteins signature 2. 205 224 IPR023409 -
Ceso4g04253 249 PANTHER 14-3-3 PROTEIN 7 228 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Ceso4g04253 249 Gene3D - 4 235 IPR036815 -
Ceso4g04253 249 Pfam 14-3-3 protein 7 223 IPR023410 -
Ceso4g04253 249 ProSitePatterns 14-3-3 proteins signature 1. 28 38 IPR023409 -
Ceso4g04253 249 MobiDBLite consensus disorder prediction 223 249 - -
Ceso4g04253 249 SMART 1433-4 7 236 IPR023410 -
Ceso4g04253 249 FunFam 14-3-3 gamma 1 4 233 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ceso4g04253 K06630 14-3-3 protein epsilon
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Event-related genes

Select Gene_1 Gene_2 Event_name
41223 Ceso4g04253 Ceso5g02844
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ceso Ceso-Chr1:94452058 Ceso4g04253 Ceso-Chr4:95706947 dispersed
Ceso Ceso-Chr4:95706947 Ceso7g01631 Ceso-Chr7:26037611 dispersed
Ceso Ceso-Chr4:27040071 Ceso4g04253 Ceso-Chr4:95706947 transposed
Ceso Ceso-Chr2:104878765 Ceso4g04253 Ceso-Chr4:95706947 wgd
Ceso Ceso-Chr4:95706947 Ceso5g02844 Ceso-Chr5:66834891 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ceso7g01631 . 3 262 14-3-3 family AT1G35160 85.057 2.72e-163 451.0
Ceso6g02502 ACH 4 242 14-3-3 family AT5G65430 85.774 1.57e-154 429.0
Ceso5g02844 ACH 10 264 14-3-3 family AT1G26480 63.83 6.92e-114 330.0
Ceso4g01541 . 5 246 14-3-3 family AT1G26480 59.504 1.36e-96 280.0
Ceso4g04253 ACH 28 256 14-3-3 family AT1G26480 86.383 3.01e-149 415.0
Ceso2g01051 ACH 4 247 14-3-3 family AT5G10450 85.246 1.04e-157 436.0
Ceso2g01119 . 3 259 14-3-3 family AT1G78300 88.76 6.10e-167 460.0
Ceso2g01072 . 3 259 14-3-3 family AT1G78300 88.76 6.10e-167 460.0
Ceso2g02321 . 2 256 14-3-3 family AT1G78300 78.596 2.74e-157 437.0
Ceso2g04383 ACH 6 246 14-3-3 family AT1G26480 76.763 8.62e-133 373.0
Ceso1g03698 . 1 251 14-3-3 family AT2G42590 73.307 3.09e-139 390.0
Ceso1g03718 . 6 63 14-3-3 family AT4G09000 83.051 3.81e-27 98.2