AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla5g04165 ATGGAAGAATCACGTAACCCATTTATTCAGTCTAATATTATCGAGTCAGCCAATACTTATAGTGCAAGATTCAACCCTGATAAGCGTGGGCGCCACAACTTCATTGGGCCTGGGTTTCCTGGGCTGAAGAAACGAGGTCATACTCTTGGTAACCGTTCGTGGATCAAAATCGAGCAAAATGGGAACTCCAAAGTTGTGGAGCTAGATAAGGCAACTGTAATGAGACATTGTTCATTGCCTGCTAGAGATCTTCGTCTTTTGGATCCTCTTTTTATTTATCCATCTACGATATTAGGCCGTGAGAAGGCTATTGTGGTTAGCCTTGAGCAGATTAGATGTATAATTACAGCTGATGAGGTGTTTCTTATGAATTCACTTGACGGTTCTGTAGTTCAATATAAAACGGAACTGTGCAAACGTCTTCATCAAGAAAAATACCACTCTGATGACTTACCATTCGAGTTTCGGGCGTTGGAACTAGCTCTGGAGTTTGCATGCCTCACTCTTGATACTCAGGTGAAAGAGTTGGAAATGGAAATTCATCCCGTGCTTGATGAACTTGCAAAATCAATAAGTACTCTAAATCTTGAACGTGTTCGTAGATTCAAAGGCCACCTTTTAGCATTGACTCAACGGGTGCAAAAGGTTTGCGATGAAATAGAACAGCTAATGAATGATGATGGTGATATGGCTGAGATGTATTTAACCGAGAAAAAACAAAGAACTTCGTGTAATGATTTATATGATCAAGTACAAGGAAGTAGTTTGATCGGGCCTGGAGTAGGACTAGGATCTGTATCTGCTCCCGTATCTCCTGTGGGTTCCACAGTGATGCACATAACTTGCAAAGGGCGTTTAGTAATACTGAAAACATTGATCAACTTGAGATGTTGCTGGGCGTATTTTGTTGGAATTGACAACACTCTAAACAAGCTGCTTTCGCTCAAGGAATATATTGATGACACTGAAGATCTGATCAACATCAAACTTGGAAATGTTCAGAACAAGCTGATCAAGTTCGAGTTGCTCTTGACAGCTGCTACGTTTTTGGTTACCGTGTTTGCTGTTGTGACTGCAGTGTTTGGAATGAACTTTGAAGATGACGTTTTTGACGAGCCAAACAGATTCAATTGGGTCGTTTCTATCAGTGCAACATTATGTTTTGTCTTGTATATCTGTTTCTTGATTTATTTCAAACATAAGAAAGTTTTCCCTCTGTAG 1221 40.21 MEESRNPFIQSNIIESANTYSARFNPDKRGRHNFIGPGFPGLKKRGHTLGNRSWIKIEQNGNSKVVELDKATVMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLEQIRCIITADEVFLMNSLDGSVVQYKTELCKRLHQEKYHSDDLPFEFRALELALEFACLTLDTQVKELEMEIHPVLDELAKSISTLNLERVRRFKGHLLALTQRVQKVCDEIEQLMNDDGDMAEMYLTEKKQRTSCNDLYDQVQGSSLIGPGVGLGSVSAPVSPVGSTVMHITCKGRLVILKTLINLRCCWAYFVGIDNTLNKLLSLKEYIDDTEDLINIKLGNVQNKLIKFELLLTAATFLVTVFAVVTAVFGMNFEDDVFDEPNRFNWVVSISATLCFVLYICFLIYFKHKKVFPL 406
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla5g04165 406 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 39 403 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Chla5g04165 406 Gene3D Magnesium transport protein CorA, transmembrane region 129 337 - -
Chla5g04165 406 CDD Mrs2-Mfm1p-like 54 403 IPR039204 -
Chla5g04165 406 Pfam Magnesium transporter MRS2-like 59 242 - -
Chla5g04165 406 Coils Coil 206 226 - -
Chla5g04165 406 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 343 395 IPR045863 -
Chla5g04165 406 Gene3D Magnesium transport protein CorA, transmembrane region 344 402 - -
Chla5g04165 406 FunFam Magnesium transporter MRS2-1 41 125 - -
Chla5g04165 406 Gene3D - 44 125 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla5g04165 K16075 magnesium transporter
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr5:178852349 Chla7g05833 Chla-Chr7:258167200 dispersed
Chla Chla-Chr5:178302715 Chla5g04165 Chla-Chr5:178852349 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chla7g05818 . 1 388 MRS2 gene family AT1G80900 56.79 5.68e-139 399.0
Chla5g06291 . 19 459 MRS2 gene family AT5G22830 60.626 9.98e-168 477.0
Chla7g05830 . 73 333 MRS2 gene family AT1G80900 75.379 1.95e-132 380.0
Chla7g05813 . 164 312 MRS2 gene family AT1G16010 60.667 3.91e-45 151.0
Chla1g05505 . 5 386 MRS2 gene family AT5G09690 66.234 1.31e-177 498.0
Chla7g05833 . 73 434 MRS2 gene family AT1G80900 80.274 0.0 578.0
Chla4g01591 . 295 458 MRS2 gene family AT5G22830 76.22 1.11e-75 232.0
Chla1g02460 . 47 484 MRS2 gene family AT3G19640 63.111 0.0 519.0
Chla5g01793 ACH 1 434 MRS2 gene family AT1G80900 70.0 0.0 565.0
Chla7g05820 . 1 387 MRS2 gene family AT1G80900 52.941 1.95e-114 335.0
Chla9g04973 . 16 386 MRS2 gene family AT5G09690 71.053 0.0 506.0
Chla6g06539 . 28 312 MRS2 gene family AT5G09690 72.632 1.72e-135 387.0
Chla6g06469 . 184 243 MRS2 gene family AT5G09720 58.333 9.05e-16 67.0
Chla6g05113 . 1 436 MRS2 gene family AT3G58970 67.325 0.0 569.0
Chla1g06789 . 47 93 MRS2 gene family AT3G19640 68.085 1.15e-15 71.2
Chla5g01805 . 1 442 MRS2 gene family AT1G16010 73.661 0.0 619.0
Chla4g02158 ACH 1 386 MRS2 gene family AT5G09690 66.329 0.0 507.0
Chla7g04178 . 308 341 MRS2 gene family AT1G80900 67.647 7.24e-07 48.1
Chla7g05826 . 186 359 MRS2 gene family AT1G16010 66.111 3.35e-66 211.0
Chla8g03188 . 123 459 MRS2 gene family AT5G22830 80.415 0.0 531.0
Chla6g03101 . 47 484 MRS2 gene family AT3G19640 67.257 0.0 580.0
Chla2g02572 . 273 398 MRS2 gene family AT3G19640 39.535 2.73e-14 66.6
Chla1g04423 . 47 484 MRS2 gene family AT3G19640 61.842 0.0 521.0
Chla3g02829 . 215 249 MRS2 gene family AT3G19640 62.857 7.24e-08 47.4
Chla6g05186 . 192 344 MRS2 gene family AT5G09690 54.248 7.64e-40 135.0
Chla1g05504 . 66 478 MRS2 gene family AT3G19640 51.422 1.97e-127 375.0
Chla1g04866 . 174 401 MRS2 gene family AT1G16010 57.384 1.14e-65 207.0
Chla5g04154 . 1 421 MRS2 gene family AT2G03620 60.233 1.51e-157 449.0
Chla5g04165 . 1 421 MRS2 gene family AT2G03620 59.016 7.03e-159 452.0
Chla2g02101 . 47 484 MRS2 gene family AT3G19640 58.862 2.90e-174 497.0
Chla2g06752 . 1 442 MRS2 gene family AT1G16010 80.493 0.0 708.0
Chla9g05013 . 16 386 MRS2 gene family AT5G09690 74.866 0.0 549.0
Chla2g06737 ACH 1 442 MRS2 gene family AT1G16010 80.984 0.0 714.0
Chla7g05822 . 1 351 MRS2 gene family AT1G80900 62.147 1.51e-138 397.0