AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla5g04166 ATGGAGTTTTGGGTGGTTGCAGCAGCTACAGGTGCTGGCTATGTAGCCAAACACTGGCAGAACTTATCAGGGGACAAAGATGGCTCATCAAAGCTGTCGCCTATGTTGTCACCACGGGTGCAACCAGATACATGCCAACTGTTCCGTAAGAAGCCTAACTCAGTTTCTGGTTCGGCTCCAATCTTTATCGAGAAACAAGTATTTCAAGATAACACAAATGATATTAATGGAAATCAACATCACTTTGAAACTTCTACCCCGCCTTCTAGCCCTCTTTTACATGAATTCAGAACCAAGAACGCTAATAGAAAATCTTTCTCGAGCCTAAGGCCCTTAATGTTGACTGGTAATAGCAGAGATTGTCAAAGAAGACAAGTGACACAAGTTAATGATGTTAACGATCATAAGATATTTTTCATGGAAGAAAAGGGAGCATCTGGGGAAGCAGATATGTTTGAGCCAATTGGATCAGTGAAGCTGCCAAGGAGACCAGAAAAAACGCATTCACAAGGCAAGGACACGGTGTCATTGTTCCTCGGGATTACAATTGGCATATTATCAAGTATTGTGACTAATCAACATGAAATTGAACACCTAAATGAACTGCTAGAACAAGCTGAGAATATTGTTCAAGATTTACACAATAGACTTGAAGTAAAAGATGGATTTACCACAAAGGAGACTGGCACCAAAACAGATGGAACTACTCAAACTGATAGCTCAAAAGTTGAGAACTGTGAATTAACAAGTGATATCGAGGCAGAGCTTGAGGCCGAGCTTGAAAGATTGGAAGAAAATATGAAGGGTCCCACTCTGCAAAGATTGTCTGATGTGGTTGAGATTGATTCAGACTTTGAAGCAGATATAGCTAGAGGCGACTTGAACCTAGATGCACTAAACTGGCAACTTGATAGCCAATCTGAATCAGACAATGATGACAAATGGGTGAAAATTTCACCTCTTGATTTACGGTTACGTCTTCACGAAGTAGTCGAGTCAGAACTGAGAGCACGTATTGATGCGCTGGAGGCAGTTCTCGAGAACCGAAAAAGTCAAAGTAAGCCACATTCTCCAGAACCACAAGAAGAAAAATCTTTCTGGGATTTTGACCACACGAGAATTGAATCTTCTTCATCAACCCCTTAA 1146 41.19 MEFWVVAAATGAGYVAKHWQNLSGDKDGSSKLSPMLSPRVQPDTCQLFRKKPNSVSGSAPIFIEKQVFQDNTNDINGNQHHFETSTPPSSPLLHEFRTKNANRKSFSSLRPLMLTGNSRDCQRRQVTQVNDVNDHKIFFMEEKGASGEADMFEPIGSVKLPRRPEKTHSQGKDTVSLFLGITIGILSSIVTNQHEIEHLNELLEQAENIVQDLHNRLEVKDGFTTKETGTKTDGTTQTDSSKVENCELTSDIEAELEAELERLEENMKGPTLQRLSDVVEIDSDFEADIARGDLNLDALNWQLDSQSESDNDDKWVKISPLDLRLRLHEVVESELRARIDALEAVLENRKSQSKPHSPEPQEEKSFWDFDHTRIESSSSTP 381
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla5g04166 381 Coils Coil 189 216 - -
Chla5g04166 381 PANTHER EMB|CAB62613.1 1 354 IPR040348 GO:0008356(InterPro)
Chla5g04166 381 MobiDBLite consensus disorder prediction 347 371 - -
Chla5g04166 381 Coils Coil 246 273 - -
Chla5g04166 381 Coils Coil 332 352 - -
Chla5g04166 381 MobiDBLite consensus disorder prediction 347 381 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla5g04166 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr5:178854920 Chla7g05212 Chla-Chr7:235257191 dispersed
Chla Chla-Chr2:224254810 Chla5g04166 Chla-Chr5:178854920 transposed
Chla Chla-Chr5:178300133 Chla5g04166 Chla-Chr5:178854920 wgd