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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05280 ATGCCAGAGGGTCATCAATATAAAACAGTGTCGGGGTTTGTCTGCGAGCCATTTGGATATATCCCCAAAATAGGTGAAAGCATAAAGGTGGTACTTGAGAAGGAAGAAGATCATGACGAGTATACTGAAGATGATGGTGATTGCCAAAATCCCAAAGAAAAAGAAAAGAACCAAGTTTTTAAAATAGAGATATTAGCAGGAAATGCGAGAAAGGTTGGTGCAGTGAGGTTTGAACGTGTGACACATGAGGAAGAAACGGCAAAAGATGTGAAGAAACTAGTTCCTAAATTAATGAAACAGAAATAG 306 38.56 MPEGHQYKTVSGFVCEPFGYIPKIGESIKVVLEKEEDHDEYTEDDGDCQNPKEKEKNQVFKIEILAGNARKVGAVRFERVTHEEETAKDVKKLVPKLMKQK 101
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05280 101 PANTHER HEMOLYSIN-RELATED 1 90 - -
Chla6g05280 101 Pfam Transporter associated domain 1 80 IPR005170 -
Chla6g05280 101 Gene3D - 1 96 IPR016169 -
Chla6g05280 101 SUPERFAMILY FAD-binding-transporter-associated domain-like 2 86 IPR036318 GO:0050660(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05280 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr6:207751267 Chla6g05280 Chla-Chr6:207948803 dispersed
Chla Chla-Chr6:207948803 Chla6g05266 Chla-Chr6:207492339 dispersed
Chla Chla-Chr6:207757556 Chla6g05280 Chla-Chr6:207948803 proximal