AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05283 ATGCAGGCTTCTAACCAGCCATATTACTGGACGACGCCTACACAGCAGCACATGGATCAGAATCTATACTTGGGTGATGTAAGCCAAGGAAGCCACTTGTCTAATCAGACACCTGAATTTGCCAACAATTCTTCTTCTTCAGTCAGCTTGTCTCCAAATGGCAGCCCGATATCATTGCAAGATTCTCACTCCTTCCAACCCGACCCGTATCATTCACCTGATTATACATACAGCTCTCACGAAAGTAAGGCTGGTTTTGAAGAAAACGTCGATGATTTGCAGCTCAGGCTTAGTGAGATACAAACTATACTGGATACTGATCAAGATTTTGCAGGGTCATTCGATGTCTCTTCTTGGGTTGAGACTGGTTTAGATAATAATAATATACATCCAGTAAACGATCAATACAGAATAATGAAACAGATTATTGCTAAAGGAGATTTGAAAGAAGGGCTTTTTGCTTGTGCTAAAGCAGTTGCTGAAAACGATACACTAACTGCTGAATGGCTAATATCAATGTTACGCCCGTTGGTTTCTGTTTCTGGTGATCCTGCACAAAGATTGGGGGCTTACATGCTAGAAGGGCTTGTGGCTAGAATGTCGTCTTCAGGTAGTTTTATCTACAAAGCTTTAAAGTGTAAAGAGCCAACTGGTGGTGAACTCTTTTCGTATATGCTCTTACTCTATGAAGCCTGTCCGTATTTCAAATTTGGATACTTGTCTGCAAACGGTGCGATTGCTGAAGCCATCAAGAATGAAGACAAAATCCATATAATCGATTTTCAGATTGCACAGGGTGGTCAATGGGTGACCCTTATCCAGGCTCTAGCGGCTCGACCCGGTGGTCCACCAAAGCTAAGGATCACTGGTATTGATGATGTTAGAAATTCATTCGCTAGGGGTGGAGGACTTAACATCGTTGGGCAGAGACTCGCGAAACTTGCAGAATCATGTAAAGTGCCATTTGAGTTTCATGCTGTGCCAGTTTCTGGTTCGGATATTCAGCTTCACCATTTTAAGGTTCAGCCTGGTGAGGCATTGGCAGTTAATTGTCCATTTGTGCTTCACCATGTACCAGACGAGAGTGTGAATCCTCAGAATCATAGAGACAGGTTGTTAAGGCTTATAAAGAGTTTATCTCCGAAAGTTGTGACTCTTGTTGAGCAAGAAGCCAATGTCAACACTGCTAAATTCTTTCATAGGTTTCAAGAAGTGTTCAGTTACTATTTAGCTATGTTTGAATCAATTGATGCAACTCTAGAAAGGGATCATAAAGACCGAATCAACGTAGAACAACATTGTCTTGCTGGTGAAATAGTTAATATATTAGCATGTGAAGGGGTCGAGAGGGAGGAGAGGCATGAGCTTCATGGAAAATGGAGGTCACGTTTTAAAATGGCAGGATTTACTCCATATCCTTTGAGCTCGTATGTGAACGGTACTATAAAGACTCTTCTTGAAAGCTATTGTGATAAGTATAGACTTGAAGAGCGAGATGGGGCTTTGTTTCTTGGATGGATGAATCGAGATTTGGTGTCTTCTTGTGCATGGAACTGA 1557 41.81 MQASNQPYYWTTPTQQHMDQNLYLGDVSQGSHLSNQTPEFANNSSSSVSLSPNGSPISLQDSHSFQPDPYHSPDYTYSSHESKAGFEENVDDLQLRLSEIQTILDTDQDFAGSFDVSSWVETGLDNNNIHPVNDQYRIMKQIIAKGDLKEGLFACAKAVAENDTLTAEWLISMLRPLVSVSGDPAQRLGAYMLEGLVARMSSSGSFIYKALKCKEPTGGELFSYMLLLYEACPYFKFGYLSANGAIAEAIKNEDKIHIIDFQIAQGGQWVTLIQALAARPGGPPKLRITGIDDVRNSFARGGGLNIVGQRLAKLAESCKVPFEFHAVPVSGSDIQLHHFKVQPGEALAVNCPFVLHHVPDESVNPQNHRDRLLRLIKSLSPKVVTLVEQEANVNTAKFFHRFQEVFSYYLAMFESIDATLERDHKDRINVEQHCLAGEIVNILACEGVEREERHELHGKWRSRFKMAGFTPYPLSSYVNGTIKTLLESYCDKYRLEERDGALFLGWMNRDLVSSCAWN 518
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05283 518 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 121 517 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Chla6g05283 518 Pfam GRAS domain family 149 517 IPR005202 -
Chla6g05283 518 ProSiteProfiles GRAS family profile. 139 518 IPR005202 -
Chla6g05283 518 MobiDBLite consensus disorder prediction 27 79 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05283 K27748 scarecrow-like transcription factor PAT
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr3:188364483 Chla6g05283 Chla-Chr6:208102300 dispersed
Chla Chla-Chr5:57757224 Chla6g05283 Chla-Chr6:208102300 dispersed
Chla Chla-Chr5:57985162 Chla6g05283 Chla-Chr6:208102300 dispersed
Chla Chla-Chr6:208102300 Chla6g05601 Chla-Chr6:221830738 dispersed
Chla Chla-Chr6:208102300 Chla6g05285 Chla-Chr6:208160306 proximal
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chla3g01199 . 258 348 GRAS Transcription Factor family AT3G03450 36.957 6.55e-11 61.2
Chla7g05365 . 165 529 GRAS Transcription Factor family AT1G14920 30.366 1.55e-45 164.0
Chla2g04936 . 170 547 GRAS Transcription Factor family AT3G03450 28.346 1.86e-47 171.0
Chla7g02910 . 597 673 GRAS Transcription Factor family AT1G07520 40.244 6.55e-13 64.7
Chla6g03491 . 73 615 GRAS Transcription Factor family AT2G37650 48.057 8.33e-161 477.0
Chla9g04843 . 150 244 GRAS Transcription Factor family AT3G46600 27.368 1.23e-07 48.9
Chla7g05815 . 308 420 GRAS Transcription Factor family AT3G54220 36.975 1.80e-11 63.2
Chla4g03068 . 59 581 GRAS Transcription Factor family AT3G46600 43.561 1.39e-148 438.0
Chla2g01229 . 73 713 GRAS Transcription Factor family AT2G37650 51.982 0.0 637.0
Chla2g00320 . 40 444 GRAS Transcription Factor family AT1G55580 48.649 1.37e-123 363.0
Chla4g01194 . 31 405 GRAS Transcription Factor family AT5G41920 64.858 1.68e-177 501.0
Chla6g02248 . 103 555 GRAS Transcription Factor family AT4G00150 51.587 1.57e-157 461.0
Chla6g05540 . 147 506 GRAS Transcription Factor family AT1G66350 34.501 2.66e-50 177.0
Chla7g03443 . 45 478 GRAS Transcription Factor family AT1G50420 38.215 3.54e-104 315.0
Chla1g01339 . 9 510 GRAS Transcription Factor family AT3G13840 47.328 6.79e-143 421.0
Chla6g05601 . 73 489 GRAS Transcription Factor family AT5G48150 57.737 3.00e-174 499.0
Chla6g05285 . 155 597 GRAS Transcription Factor family AT1G50600 59.243 0.0 546.0
Chla5g01752 . 64 490 GRAS Transcription Factor family AT5G48150 70.698 0.0 624.0
Chla2g00244 . 40 444 GRAS Transcription Factor family AT1G55580 46.929 2.02e-113 337.0
Chla2g04935 . 170 547 GRAS Transcription Factor family AT3G03450 27.792 3.15e-51 182.0
Chla2g01220 . 73 716 GRAS Transcription Factor family AT2G37650 46.364 0.0 532.0
Chla2g04934 . 170 547 GRAS Transcription Factor family AT3G03450 28.792 2.31e-54 191.0
Chla4g03825 . 18 593 GRAS Transcription Factor family AT1G21450 47.359 1.25e-162 470.0
Chla4g03066 . 222 764 GRAS Transcription Factor family AT1G07530 46.751 2.33e-163 483.0
Chla1g00046 . 27 529 GRAS Transcription Factor family AT1G14920 48.544 2.75e-161 468.0
Chla8g04427 . 45 545 GRAS Transcription Factor family AT3G03450 62.548 0.0 654.0
Chla4g03062 . 222 764 GRAS Transcription Factor family AT1G07530 46.0 4.12e-165 488.0
Chla6g03998 . 2 767 GRAS Transcription Factor family AT1G07530 45.925 0.0 605.0
Chla9g04427 . 1 584 GRAS Transcription Factor family AT5G66770 50.744 5.40e-177 510.0
Chla5g01759 . 63 487 GRAS Transcription Factor family AT5G48150 63.551 0.0 532.0
Chla7g04060 ACH 28 484 GRAS Transcription Factor family AT4G36710 47.78 3.95e-131 387.0
Chla5g02013 . 167 529 GRAS Transcription Factor family AT1G14920 35.142 7.10e-74 242.0
Chla7g05334 . 165 529 GRAS Transcription Factor family AT1G14920 34.625 2.28e-69 229.0
Chla4g01676 . 28 530 GRAS Transcription Factor family AT1G14920 57.913 0.0 639.0
Chla1g00306 . 411 540 GRAS Transcription Factor family AT1G63100 44.776 2.30e-27 105.0
Chla6g06106 . 45 490 GRAS Transcription Factor family AT5G48150 59.292 0.0 534.0
Chla3g01198 . 259 509 GRAS Transcription Factor family AT3G13840 23.048 2.33e-09 57.0
Chla5g01328 . 23 444 GRAS Transcription Factor family AT1G55580 47.356 3.83e-121 358.0
Chla26903g00003 . 122 373 GRAS Transcription Factor family AT1G50420 48.425 2.47e-64 206.0
Chla5g02760 . 21 103 GRAS Transcription Factor family AT2G29060 41.304 9.16e-14 66.2
Chla2g04937 . 30 192 GRAS Transcription Factor family AT5G41920 26.506 1.51e-09 56.2
Chla8g01325 . 86 506 GRAS Transcription Factor family AT1G07530 35.765 5.18e-62 214.0
Chla7g03030 . 141 507 GRAS Transcription Factor family AT1G66350 44.271 9.67e-99 311.0
Chla2g05207 . 30 656 GRAS Transcription Factor family AT1G63100 51.02 0.0 526.0
Chla6g03504 . 73 714 GRAS Transcription Factor family AT2G37650 53.064 0.0 654.0
Chla8g02076 ACH 37 486 GRAS Transcription Factor family AT4G36710 47.548 2.85e-134 397.0
Chla6g05911 . 20 264 GRAS Transcription Factor family AT5G41920 51.02 9.87e-76 243.0
Chla26882g00001 . 1 530 GRAS Transcription Factor family AT4G37650 54.628 0.0 548.0
Chla7g06626 . 9 510 GRAS Transcription Factor family AT3G13840 44.444 1.13e-139 412.0
Chla5g01753 . 63 490 GRAS Transcription Factor family AT5G48150 59.629 2.66e-169 482.0
Chla6g06122 . 45 490 GRAS Transcription Factor family AT5G48150 55.654 1.24e-168 480.0
Chla6g05283 . 140 596 GRAS Transcription Factor family AT1G50600 61.771 0.0 577.0
Chla2g03890 . 31 640 GRAS Transcription Factor family AT5G52510 38.725 4.23e-103 323.0
Chla2g03139 . 70 714 GRAS Transcription Factor family AT2G37650 46.39 0.0 542.0
Chla4g03061 . 59 581 GRAS Transcription Factor family AT3G46600 45.455 5.58e-163 475.0
Chla4g03067 . 314 764 GRAS Transcription Factor family AT1G07530 40.659 9.01e-108 336.0
Chla1g04173 . 296 650 GRAS Transcription Factor family AT3G54220 56.145 7.31e-143 423.0
Chla5g00417 . 150 507 GRAS Transcription Factor family AT1G66350 31.25 6.47e-53 185.0
Chla4g03063 . 20 766 GRAS Transcription Factor family AT1G07530 46.386 0.0 590.0
Chla6g05556 . 73 489 GRAS Transcription Factor family AT5G48150 57.506 2.20e-173 496.0
Chla6g05511 . 147 506 GRAS Transcription Factor family AT1G66350 32.558 9.68e-46 164.0
Chla5g03207 . 241 651 GRAS Transcription Factor family AT3G54220 80.769 0.0 665.0
Chla3g04316 . 118 530 GRAS Transcription Factor family AT4G37650 51.402 1.97e-141 412.0
Chla4g01709 . 209 582 GRAS Transcription Factor family AT2G01570 74.674 0.0 592.0
Chla1g02080 . 38 490 GRAS Transcription Factor family AT5G48150 67.888 0.0 628.0
Chla1g01327 ACH 9 510 GRAS Transcription Factor family AT3G13840 47.328 7.32e-143 421.0
Chla2g03199 . 70 714 GRAS Transcription Factor family AT2G37650 45.701 0.0 546.0
Chla8g05527 . 4 482 GRAS Transcription Factor family AT1G50420 64.938 0.0 622.0
Chla6g05916 . 393 651 GRAS Transcription Factor family AT3G54220 52.672 5.53e-77 253.0
Chla8g00223 ACH 185 640 GRAS Transcription Factor family AT5G52510 46.025 5.14e-113 347.0
Chla26824g00003 . 1 479 GRAS Transcription Factor family AT1G50420 62.63 0.0 598.0
Chla7g02646 . 171 544 GRAS Transcription Factor family AT3G03450 34.491 1.47e-57 197.0
Chla4g06816 . 152 516 GRAS Transcription Factor family AT5G17490 24.936 8.91e-19 87.0
Chla8g00105 . 24 116 GRAS Transcription Factor family AT1G66350 47.312 1.25e-18 81.3
Chla9g00161 . 91 555 GRAS Transcription Factor family AT4G00150 39.919 2.34e-100 313.0
Chla2g03869 ACH 31 640 GRAS Transcription Factor family AT5G52510 42.326 4.76e-127 386.0
Chla7g05816 . 48 186 GRAS Transcription Factor family AT5G41920 34.694 1.12e-13 67.4
Chla4g03065 . 20 535 GRAS Transcription Factor family AT1G07530 39.139 1.52e-86 280.0
Chla4g03821 . 18 557 GRAS Transcription Factor family AT1G21450 54.991 0.0 566.0
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Chla GRAS 1.5e-135 CL0063 TF GRAS