AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05289 ATGAAGACTAAGAGCAATCAGGTAACCAAGAGCAAGCCAGAAATACAAACCCAAGCTTCACAGGAGTCCCCAAGTGACCAACATAACGATGCTACAGAGGCTCCTGTTCCTGACACTGGTTCAGCCTCCATTTCGAGCAATGACAACAGAAAAGTTTCTCGAGAGGATATTGAACTTGTCCAGAACTTGATAGAACGCTGTTTGCAGCTGTATATGAACAAAGACGAGGTTGTGAAAACCTTACTAAATCGTGCAAGGATAGATCCTGGATTTACAGCTTTAGTGTGGCAGAAATTGGAAGAAGAGAATGCAGACTTTTTTAGAGCCTACTACATAAGGCTGAAACTGAAGAAGCAGATCATCCTGTTTAATCATTTGCTTGAACATCAGTACCATCTTACCAAGCATCCAGTGCATCCAAGGCTTCCTCTTGCTCCTATACAAAATGGCATCCATCCTATGCCAGTTAACAACTTACCAATGGGGTACCCTGTTCTACCACAACCTTCAATGGCAACTACTGGCCAACCTCATATGAATGCCATTGGTATGTCCAATTGTCATGTAGTCAATGGAGTGCCTGCTTCAAGTAACTTCCATCCAATGCGGATGAACTCTGGAAATGGAAGTATGGGGATGGATAGTAGTGCAGCTGATGCCACACCAGCTATTCCAGGGAATGGGGCAATATCACCCATGTCAGATATGCCTATGAGCCCTACATCAGCATCCAGTGGTCATTTCCCGTTTACTACATCTGAAATATCGGGAATGGGAGTAGACACATCAGCTCTTGATACAGCTTTTACATCTGACGTGGCAAGTTCTGTAGACTTGCATCTGCAACCTGATAATGGAACTTCTAGAGCTTTTGGTCATATCCCTTGGAATTTCAGCCTTTCAGATCTTACAGCAGATTTGTCAAATTTGGGAGATCTCGGAGCTCTTGGAAACTATCCTGGCTCCCCCTTTCTGCCATCTGATTCAGATTTATTACTTGATTCCCCGGAACAAGAGGACATTGTGGAAGATTTCTTTGCTGACTCTGTACCTGGACCACCGTGCTCCAATTCAGATGAGGAGAAGTCTTAG 1092 44.14 MKTKSNQVTKSKPEIQTQASQESPSDQHNDATEAPVPDTGSASISSNDNRKVSREDIELVQNLIERCLQLYMNKDEVVKTLLNRARIDPGFTALVWQKLEEENADFFRAYYIRLKLKKQIILFNHLLEHQYHLTKHPVHPRLPLAPIQNGIHPMPVNNLPMGYPVLPQPSMATTGQPHMNAIGMSNCHVVNGVPASSNFHPMRMNSGNGSMGMDSSAADATPAIPGNGAISPMSDMPMSPTSASSGHFPFTTSEISGMGVDTSALDTAFTSDVASSVDLHLQPDNGTSRAFGHIPWNFSLSDLTADLSNLGDLGALGNYPGSPFLPSDSDLLLDSPEQEDIVEDFFADSVPGPPCSNSDEEKS 363
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05289 363 NCBIfam TIGR01589 domain 57 113 IPR006476 -
Chla6g05289 363 Pfam Plant protein 1589 of unknown function (A-thal-3526) 60 111 IPR006476 -
Chla6g05289 363 MobiDBLite consensus disorder prediction 1 51 - -
Chla6g05289 363 PANTHER OS02G0137100 PROTEIN 54 327 IPR006476 -
Chla6g05289 363 MobiDBLite consensus disorder prediction 1 48 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05289 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
42759 Chla5g01064 Chla6g05289
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr5:35070830 Chla6g05289 Chla-Chr6:208323216 dispersed
Chla Chla-Chr6:208323216 Chla7g02851 Chla-Chr7:124572317 dispersed
Chla Chla-Chr6:208323216 Chla2g06107 Chla-Chr2:233868397 transposed