Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Chla6g05316	ATGTCAAAGAGGCAAAAAACAACTTCGCGCCGATCACAATCCAACAACAAGATCATCCACACATATGGGGCCGACAACATGACATCAAATATTCAATGTACGATGAATATACAAGATTCTGTTGCAGCTGTAGAATCTATTTTAAGGTACAGGTTTTTGGACAAAAGTTTGTTAGAAGAAGCTTTGACACATTCTTCATACACGGAGAGTCAGTCGTATCAAAGGTTGGAGTTTCTTGGTGATGCTGCTCTTGGGAATGCGATATCGAGTTTTGTTTATTTGGCTTACCCTGATCTTGACCCTGGCCAATTGTCGCTTCTTCGTGCTGCGAATATTAGTACCGAGAAACTTGCGAGAGTGGCTGTGCAACATGGGTTGTATAAGTATGTCAGGCATAATGCAGCAGATATGCTTAGTGATAAGGTTAGAGAATTTGTGGATGTTGTTGAGGGAGAACAAGAGATAGTTGTGCACGGTGGACAAATAAAAGCCCCAAAAGTTTTAGCGGATATCGTAGAATCAGTGGCTGCAGCTGTTTATGTTGATTGTGGGTTCAATTTGCAAAGTATGTGGCTGGTAATCAGAGAGTTACTTGAACCAATAGTAATGCTAAATGTCCTCGAGAAAAAACCACAGCCTATTACAATGCTGTTTGAGTTATGTCAGAAAGATGGGAAGCATCTTGAAATAAAGCATTGCAGGAAAGGTGATAGAAACATTGCAAGCGTTTTTGTGGATGGGATATTTATTGCCTCTGGCTCTTCAGAGACCAAAGAGAATGCAAAGCTTCATGCAGCCGAAGCCGCTTTGTCTAAGTTAACAAGGTCCAATAACATCAGCGCAATAGTCCCGTATGTAATTGGTGGTTTAAATGAAGCAACTGAAATTGAAGGTGCCAAACAGAAATTACACGAGCTTTGCAACAAGAAACGATGGCCAAAAGCCACTTACAAAATTAAGAATGAGCTGGGACCCGCCCACGATAGAAGATACGCATCATCAGTTGAAATTGATGTTTCCAATAGGGTTTTTATAGTGACGGGAGAAATGAGGTCTAGAGTAAAGGATGCTGAGAATTCTGCAGCCTCGGTGATGTTCTGTGCTTTGCAAAAATATGGATTGATATGA	1128	40.96	MSKRQKTTSRRSQSNNKIIHTYGADNMTSNIQCTMNIQDSVAAVESILRYRFLDKSLLEEALTHSSYTESQSYQRLEFLGDAALGNAISSFVYLAYPDLDPGQLSLLRAANISTEKLARVAVQHGLYKYVRHNAADMLSDKVREFVDVVEGEQEIVVHGGQIKAPKVLADIVESVAAAVYVDCGFNLQSMWLVIRELLEPIVMLNVLEKKPQPITMLFELCQKDGKHLEIKHCRKGDRNIASVFVDGIFIASGSSETKENAKLHAAEAALSKLTRSNNISAIVPYVIGGLNEATEIEGAKQKLHELCNKKRWPKATYKIKNELGPAHDRRYASSVEIDVSNRVFIVTGEMRSRVKDAENSAASVMFCALQKYGLI	375

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Chla6g05316	375	Gene3D	-	296	371	-	-
	Chla6g05316	375	Pfam	double strand RNA binding domain from DEAD END PROTEIN 1	298	370	-	-
	Chla6g05316	375	SMART	riboneu5	56	207	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Chla6g05316	375	PANTHER	DICER-RELATED	34	347	-	GO:0003723(PANTHER)\|GO:0004525(PANTHER)\|GO:0005634(PANTHER)\|GO:0005737(PANTHER)\|GO:0030422(PANTHER)
	Chla6g05316	375	CDD	RIBOc	56	202	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Chla6g05316	375	ProSiteProfiles	Ribonuclease III family domain profile.	41	184	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Chla6g05316	375	SUPERFAMILY	dsRNA-binding domain-like	166	275	-	-
	Chla6g05316	375	Pfam	Ribonuclease III domain	74	184	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Chla6g05316	375	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	298	371	IPR014720	-
	Chla6g05316	375	Gene3D	Ribonuclease III domain	29	205	IPR036389	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Chla6g05316	375	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	212	275	IPR014720	-
	Chla6g05316	375	SMART	DRBM-3	213	274	IPR014720	-
	Chla6g05316	375	SMART	DRBM-3	299	370	IPR014720	-
	Chla6g05316	375	SUPERFAMILY	dsRNA-binding domain-like	298	373	-	-
	Chla6g05316	375	SUPERFAMILY	RNase III domain-like	39	201	IPR036389	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Chla6g05316	375	ProSitePatterns	Ribonuclease III family signature.	74	82	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Chla6g05316	375	Gene3D	-	208	281	-	-
	Chla6g05316	375	Pfam	Double-stranded RNA binding motif	213	273	IPR014720	-
	Chla6g05316	375	FunFam	Endoribonuclease dicer-like 1	35	205	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Chla6g05316	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Chla	Chla-Chr2:94922395	Chla6g05316	Chla-Chr6:209454367	dispersed
	Chla	Chla-Chr6:209454367	Chla7g01555	Chla-Chr7:58916676	dispersed
	Chla	Chla-Chr6:209230425	Chla6g05316	Chla-Chr6:209454367	proximal