Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Chla6g05325	ATGAAGATAGTTAGGGCCCTAACATGGATTCCATTTCACCGTACTTTTCGTGCTGCGTTTTCAAGTTTTGCGATTAAGAATGTGACCAAGTCGAATTTCGACACGTCGCTGGCTGACCTTCGAGGGCATGTTAGGGACTCGGATTTTGTGGCGATCGATTTGGAAATGACGGGAGTTACGAGTGCACCGTGGAGGGAGATGTTTGAGTTTGATAGATTTGATGTGCGGTATTTGAAAGTTAAAGACTCTGCTGAGAAATTTGCTGTTGTTCAGTTTGGCGTTTGTCCGTTTCGCTGGGATTCCGGGAAGAAGTCCTTTGTTGCGCACCCGCACAACTTTTATATATTTCCACGGCAAGAAGTTGGAGGTGGTGACACGTCTTATGAGTTCCTTTGTCAGACTTCCTCGATTGATTTCTTGGCAAAGTACCAATTTGATTTCAATGTGTGTATAAAAGAAGGAATATCTTATTTATCCAGAGCACATGAGGATGAAGCCAGGTTGCAGTTACATTCAGCACATGAAGATGGGTTGACAGAGTCGCAATGCACAGCTAAAGAAATCAAAGACGTTCCACTGGTCAGAATGGCAGATATTCTTTTTGTGGAGAGAATGAGGAACAAGATCAGTACATGGCATGATGACCTGTTACAGATTAGAAATGGAGGGTCTGGTAGGACATCTCAAGACTCTACTGATTCAGTTAATCAGTTTCAGACCATATTCTTTAAGATGCGTCCAGCCATCAAACTGAATGGATATACTTCCCGCCAACTAAGGTTGATTAAGTCGGTTGTAGAAAAGAGCTTCAGAGATTTAACTTATATCCGTGTAAATGATGGTTCATGTTTTCAACAAATGATTGTCTACACAGACTCCGGGAGGGACCTAGAGTTGCTCATGAAAGAAGTTAGAGGAGATCTTTTGAAGGAAGCAGAGATTAAGATTGGAGCTGCCATCGGCTTCAGGCATGTGATTGACCTGCTTTCCTCTGAACAAAAGTTGATAGTTGGACACAATTGCTTTCTTGATATTGCTCATGTATGTAAAAAATTTGTGGGTCCTCTTCCTTCAAAGCTGGAAGAATATGTAGCGTTAGCTCACAAAAACTTCCCATACATAATTGACACAAAGATCCTTCTAAATGCAAATAACATATTGCAATTAAAGATGAAGAAAAGTAGCACATCACTGGCCAAGGCTTTTGCCATCATGTGTCCACATATTGCTTCTGGTGTCGGCAGTTCTGGTTTGGCTTCATCTGTTGCAGTGGAGGTTCAAGTAGATGATATGATATCATCAAATTGGAACTCCGGTGCCAAGCATGAAGCTGGTTATGATGCTTTCATGACAGGCTGCATTTTCGCCCAAGCATGCAATCATCTTGGTGTTGATTTCACCTCTGACTCAACGTTGATGAACGAAGAGAAGCTTAAAAACTACATTAATCTTCTTTACCTCAGCTGGAGTAGTGGAGATATAGTTGACATAAAAACTGGTACAACTACGACAGAATCTTCATCATTTAACAGCTTCAAAACCTCACAAAAGATTATATTTCCAAATATCGTCGTAATTTGGGGCTTCTCATCTAAACTCAAGGCAAGGGAGATAAAAGACTTAATATGCAAAGTTTTTGGGCTGACCTCAGTTACATCAATCTATCACTTGGACAAGACTGCTGTTTTTGTTCAATTTAGCCAGCCAGAATTGGTGTCTGAATTTCTGGAGCTAATATCGCAAATAGAGAAGAAAAAGAACGATGCAATTTATGTTTTGCACCCCCTTTCGGAGCTTTTAGAAGGTGGATCTACCCGTTCTGCTTGTTATGAGGTATACAAGGAAATATGCGCTTCACCAATTTCGAAGGTCTTGTTTGCTGATCAAGCAGAAGCTGTTAATATCAATTTGAACACCAAACTGTTAAAAAGTAAGGCCCACGAAAATGGTTCTTTTGCTAACTTAGAATCCCCGATTGATACAAAGACAGCTGAGACAAAACAACAAATTAAGTCTTCACCCCCTGGCAGCAATGATCCTAGAGGAGAAATGCTAGATATTGTCTCCTGCTGA	2073	40.81	MKIVRALTWIPFHRTFRAAFSSFAIKNVTKSNFDTSLADLRGHVRDSDFVAIDLEMTGVTSAPWREMFEFDRFDVRYLKVKDSAEKFAVVQFGVCPFRWDSGKKSFVAHPHNFYIFPRQEVGGGDTSYEFLCQTSSIDFLAKYQFDFNVCIKEGISYLSRAHEDEARLQLHSAHEDGLTESQCTAKEIKDVPLVRMADILFVERMRNKISTWHDDLLQIRNGGSGRTSQDSTDSVNQFQTIFFKMRPAIKLNGYTSRQLRLIKSVVEKSFRDLTYIRVNDGSCFQQMIVYTDSGRDLELLMKEVRGDLLKEAEIKIGAAIGFRHVIDLLSSEQKLIVGHNCFLDIAHVCKKFVGPLPSKLEEYVALAHKNFPYIIDTKILLNANNILQLKMKKSSTSLAKAFAIMCPHIASGVGSSGLASSVAVEVQVDDMISSNWNSGAKHEAGYDAFMTGCIFAQACNHLGVDFTSDSTLMNEEKLKNYINLLYLSWSSGDIVDIKTGTTTTESSSFNSFKTSQKIIFPNIVVIWGFSSKLKAREIKDLICKVFGLTSVTSIYHLDKTAVFVQFSQPELVSEFLELISQIEKKKNDAIYVLHPLSELLEGGSTRSACYEVYKEICASPISKVLFADQAEAVNINLNTKLLKSKAHENGSFANLESPIDTKTAETKQQIKSSPPGSNDPRGEMLDIVSC	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Chla6g05325	690	Pfam	CAF1 family ribonuclease	28	455	IPR006941	-
	Chla6g05325	690	SUPERFAMILY	Ribonuclease H-like	25	469	IPR012337	-
	Chla6g05325	690	MobiDBLite	consensus disorder prediction	653	676	-	-
	Chla6g05325	690	MobiDBLite	consensus disorder prediction	653	690	-	-
	Chla6g05325	690	Gene3D	-	226	499	IPR036397	GO:0003676(InterPro)
	Chla6g05325	690	Gene3D	-	27	193	IPR036397	GO:0003676(InterPro)
	Chla6g05325	690	PANTHER	POLY A -SPECIFIC RIBONUCLEASE-TARGET OF EGR1, MEMBER 1	25	633	IPR051181	GO:0000175(PANTHER)\|GO:0003723(PANTHER)\|GO:0005737(PANTHER)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Chla6g05325	K01148	poly(A)-specific ribonuclease [EC:3.1.13.4]

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Chla	Chla-Chr6:168986936	Chla6g05325	Chla-Chr6:209919592	dispersed