AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chla6g05362 | ATGACTTCCCATTCAAACCAAAATCAAATACAAAATCAACAACCACAATACGATCATCAAATCATGAACCCTAACAACCACCATCAACAACCACCGTATCCACCACCACCGCAACAACCACCCTACTCCGCCGCCTCATATCCACCTCCCTACACTTTCCAACCACCTACCTACCCCAACTTCCCGCCAAATTTACAACACCAGCACTCCCTACCATATCCCACTACTATAAACCCTAACCCTAACCCTAACCACGGGGCACGTCTAATGGCCTTACTTACACCGCCGGCTTCTCCTATTCCTGACACGTCATCAATGCCGTTACCAATGCCGTTGCCGTTGCCGTTACAGAATAACTCCGGTTTTGGCGGTGCGGTGAGTGTTGGACCGGTGCGAATGGCTAGTAGTAAGATGCCGAAGGGGAGGCATTTGGCTGGGAGTAATGTGGTGTATGATATTGATGTCAGGATGAGCGGAGAAGTGCAGCCGCAATTGGAGGTAACGCCGATAACGAAATATGGTTCGGATACGAGTTTGGTTGTTGGGAGGAGGATTGCGGTTAGTAAGAGTTATATATGTTATGGATTGAAGCCGGGGACTATTAGAGTGCTTAATTATCATACGGCGTTGAGAGCGCTGTTTAAAGGACTTGCCGAGAGGGTTACAGATATGGCTTTCTTTGCGGAGGATGTTCATCTTTTAGCCAGTGCAAGCATGGATGGGCGAGTTTACGTATGGAAGATTGCAGAAGGTCCTGATGAGGATGATAAACCAGAGATCACAGGAAATATAGTAATTGCAGTCCAGTTTGTTGGAGATGGAGAACCTGTTCGTCCTCGAGTTTGTTGGCACTGCCATAAACAGGAAGTTCTTGTAGTCGGAATTGGGAACCGTATTCTTAGAATTGATACTACGAAGGTTGGGAGAGGTAAAGTATACTCTGCAGAGGAACCTCTCAGGTGCCCTGTTGATAAGTTGATTGATGGAATTCAGTTTGTTGGTAAGCATGATGGTGAGGTAACAGATCTTTCAATGTGCCAATGGATGACCACTCGTCTGGTTTCTGCTTCTGTGGATGGAACGATAAAGATTTGGGAAGATCGCAAACAGTCACCAATTGCAGTACTAAGACCACATGATGGCCTTCCTGTCAACTCCGTAACATTCTTGACTGCTCCTCACCGGCCAGATCACATCATACTTATCACTGGGGGCCCCTTGAATCGCGAAGTGAAAATATGGGCCTCAGATAGCGAAGAAGGGTGGTTGCTTCCTAGTGATGCTGATTCATGGCACTGTACTCAGGCATTGGAGTTAAAGTCTTCTGCTGAACCTAGAATCGAAGATGCATTCTTTAATCAAGTAATTGCATTACCCCAATCTGGTCTTCTCTTGTTAGCAAATGCAAGGAAAAATGCTATATATGCTGTACATTTGGATTATGGGCCCAATCCAGAAACCACCCGTATGGATTACATTGCAGAATTCACCGTGACTATGCCAATATTGAGCTTTACTGGCATTAGTGATCCTTTACCAAATGGGGACCACATCGTTAAGGTTTATTGTGTTCAAACACAGGCCATTCAGCAATACGCGTTGGACTTGTCCCAGTGCCTACCACCTCCTATTTATGATGTGTATGACAAATCAGGCTCACCCGTTTCACGTGACGAAACGAGTGCAGAAGGTTTTATGGGTTTGGGACCGTCTAGTGTTGCACCTATATCAATTCAGCGTCTGACTTCTCCATCAGCCGAAGCTGAAACTAAGCCAGTCTCATCATCAGTCGCCAAGGATACTGATGTATCTAGTGTCGTTTCACCAGCGGTTCCATTGAGCCCCAAGTTGTCTGAAAAAATATATGACTTTAGAAGTCCATCAAGCGGTTCTGATTCTCTTCATCAACTAAATAGTTATGATGATCAGACAATTGTGGAATATCCTGCTAACACACGTTTGGAATCTTCTCATTCTAATTTGTCTCATGCACCCTCACTGGATCGTGAAGAAAACAAAGTTGCAAACGAGGACCGTTCTGTCAAGTTTATGCATCCAACTCATCTGGTTACTCCTGCCGAATTGATGGCCACATCGTCATGCGAAGTAAATGATGTTGCTGTAAACTCCGAGACACAAAATGCTGAGGTGGAGGTTAAAGTTGTGGGTGAAACGGGAATCAGTCAAAACGGCGACACTGCTTATGAAGTGAAAGAACAATCTAAATCTTTCTCCTCACAGGCTTCGGCTCTTGGGCGCGATATGGCGAGAGATATGGTTAATGAGTCTAATCAGTTTGATGGATGTGTAGAAAGTAAGGTGGTGGATCAAACTTCAGATGCTCGGGGTGAACTTGGTGACGTGGTAACTGATCTATCGGCGCCGGTTGAGATGGCTGTGACTGGGATACTTCAATCTGAGGGTTCTAAATTGAGAGAGAAAAAGAAGAAGAAAAAGAATGCTCTAGTATCAGGTCAATCTGGTTCTCCGAGTTTATCAAATAATACTGGTTCTTGTGATGAAGTAGGAGTGAGTTCAAGTATCTCCTCAGAGGAAGCCATACTTTTTCAAATTCAGTCCATACAAGAAACACTTGCTCAGGTGATTCTCAACCAAAAGGAAATCGAAAAGCAGATTCCAGTGGCAGCTGCGGTACCGATGACAAAAGAAGGGAAGAGAATCGAGGCAGCCATTGGGAAGAGCATGGAGAAAATTCATAAAGCTTATAATGATGCTGATTGGGCTCGTTCTCAAGAAGAGTTCGCAAAACAGGAAAAATTGAACCAAGAACGCCATCAGCAAGTTTCGACTTCAGTCTCAGCCGCACACAAGGATTTGCTCGTGGCTACAGAGAAAATGCTGAAGAAGGAAATAGCTGCAGTTGTGCCTGCTGTTGGGCGTGCGGTTACGCCAATCTTTGAAAAGGCCGTCTCCACAGCTGTCACAGAGGCTTTCCAGAGAGGCGTCGGTGATAAGGCTGTAAATCAACTTGAGAAAACAGTTAACTCTAAGCTGGAAGCAACTGTTTCTAGGCAAATTCAAGCACAATTTCAAACTTCTGGCAAACAAGCTCTACAGGAAGCACTGAGGTTGAGTATGGAAGCTTCGGTTGTTCCTGCATTTGAGATGTCTTGCAAAACCATGTTTGAACAAGTTGATGCTACTTTTCAGAAGGGAATGGTTGAACATACAAATGCAGCTCAGCAAAAAGTTGAGTCCACACATTCACCATTGGCGTTTGCTTTGAGGGATGCCATCAATTCAGCATCATCTATGACTCAAACTTTGACCAGTGAATTGGCTGATGGTCAAAGGAAATTGATGGCTCTTGCAGTTTCTGGGGCAAGTTCTAATCCGGTAAATCCATTGATAAGCCAACTAAGCAATGGTCCTACTGTTGGTTTCCTTGAAAAGGTTGAGGCACCTGTTGATCCAACAAGAGAGTTATCTAGGATGCTAACGGAGCACAAATACGAAGAGGCTTTTACTGCTGCCCTGCAAAGAAGTGATCTTCGAATTGTTTCTTGGTTATGCTCTCAGGTCGATCTACAAGGAATTTTAGCTAGCAATCCTCTTCCTTTGAGCCAAGGTGTGCTCCTGTCATTGCTGCAACAGTTGGCATGTGATATTGGGAACGACACAACCCGAAAACTTTCATGGATGATGGATGTGGTGGTGGCCATCAAACCCTCTGATGGGATCATTGCAATGCATGTAAGGCCGATATTTGAACAAGTTTATTCCATACTTAACAATCAGGTGAACGTGCCGACGAATTCAGTTGCAGAGCTGTCCAGCTTACGTGTTGTCATTAAACTCATAAATTCTACGCTTATGAGCCTGTGA | 3846 | 44.7 | MTSHSNQNQIQNQQPQYDHQIMNPNNHHQQPPYPPPPQQPPYSAASYPPPYTFQPPTYPNFPPNLQHQHSLPYPTTINPNPNPNHGARLMALLTPPASPIPDTSSMPLPMPLPLPLQNNSGFGGAVSVGPVRMASSKMPKGRHLAGSNVVYDIDVRMSGEVQPQLEVTPITKYGSDTSLVVGRRIAVSKSYICYGLKPGTIRVLNYHTALRALFKGLAERVTDMAFFAEDVHLLASASMDGRVYVWKIAEGPDEDDKPEITGNIVIAVQFVGDGEPVRPRVCWHCHKQEVLVVGIGNRILRIDTTKVGRGKVYSAEEPLRCPVDKLIDGIQFVGKHDGEVTDLSMCQWMTTRLVSASVDGTIKIWEDRKQSPIAVLRPHDGLPVNSVTFLTAPHRPDHIILITGGPLNREVKIWASDSEEGWLLPSDADSWHCTQALELKSSAEPRIEDAFFNQVIALPQSGLLLLANARKNAIYAVHLDYGPNPETTRMDYIAEFTVTMPILSFTGISDPLPNGDHIVKVYCVQTQAIQQYALDLSQCLPPPIYDVYDKSGSPVSRDETSAEGFMGLGPSSVAPISIQRLTSPSAEAETKPVSSSVAKDTDVSSVVSPAVPLSPKLSEKIYDFRSPSSGSDSLHQLNSYDDQTIVEYPANTRLESSHSNLSHAPSLDREENKVANEDRSVKFMHPTHLVTPAELMATSSCEVNDVAVNSETQNAEVEVKVVGETGISQNGDTAYEVKEQSKSFSSQASALGRDMARDMVNESNQFDGCVESKVVDQTSDARGELGDVVTDLSAPVEMAVTGILQSEGSKLREKKKKKKNALVSGQSGSPSLSNNTGSCDEVGVSSSISSEEAILFQIQSIQETLAQVILNQKEIEKQIPVAAAVPMTKEGKRIEAAIGKSMEKIHKAYNDADWARSQEEFAKQEKLNQERHQQVSTSVSAAHKDLLVATEKMLKKEIAAVVPAVGRAVTPIFEKAVSTAVTEAFQRGVGDKAVNQLEKTVNSKLEATVSRQIQAQFQTSGKQALQEALRLSMEASVVPAFEMSCKTMFEQVDATFQKGMVEHTNAAQQKVESTHSPLAFALRDAINSASSMTQTLTSELADGQRKLMALAVSGASSNPVNPLISQLSNGPTVGFLEKVEAPVDPTRELSRMLTEHKYEEAFTAALQRSDLRIVSWLCSQVDLQGILASNPLPLSQGVLLSLLQQLACDIGNDTTRKLSWMMDVVVAIKPSDGIIAMHVRPIFEQVYSILNNQVNVPTNSVAELSSLRVVIKLINSTLMSL | 1281 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chla6g05362 | 1281 | MobiDBLite | consensus disorder prediction | 28 | 62 | - | - | |
| Chla6g05362 | 1281 | MobiDBLite | consensus disorder prediction | 810 | 843 | - | - | |
| Chla6g05362 | 1281 | Pfam | WD40 region of Ge1, enhancer of mRNA-decapping protein | 166 | 479 | IPR032401 | - | |
| Chla6g05362 | 1281 | MobiDBLite | consensus disorder prediction | 822 | 843 | - | - | |
| Chla6g05362 | 1281 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 214 | 256 | IPR001680 | GO:0005515(InterPro) | |
| Chla6g05362 | 1281 | SUPERFAMILY | WD40 repeat-like | 175 | 414 | IPR036322 | GO:0005515(InterPro) | |
| Chla6g05362 | 1281 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
| Chla6g05362 | 1281 | SUPERFAMILY | beta-sandwich domain of Sec23-24 | 9 | 104 | - | - | |
| Chla6g05362 | 1281 | Coils | Coil | 858 | 878 | - | - | |
| Chla6g05362 | 1281 | Pfam | Enhancer of mRNA-decapping protein 4, C-terminal | 1150 | 1258 | IPR049404 | - | |
| Chla6g05362 | 1281 | SMART | WD40-4 | 327 | 366 | IPR001680 | GO:0005515(InterPro) | |
| Chla6g05362 | 1281 | SMART | WD40-4 | 207 | 247 | IPR001680 | GO:0005515(InterPro) | |
| Chla6g05362 | 1281 | SMART | WD40-4 | 369 | 415 | IPR001680 | GO:0005515(InterPro) | |
| Chla6g05362 | 1281 | Gene3D | - | 160 | 450 | IPR015943 | GO:0005515(InterPro) | |
| Chla6g05362 | 1281 | PANTHER | ENHANCER OF MRNA-DECAPPING PROTEIN 4 | 22 | 1280 | IPR045152 | GO:0000932(PANTHER)|GO:0031087(InterPro)|GO:0031087(PANTHER) | |
| Chla6g05362 | 1281 | FunFam | Enhancer of mRNA-decapping protein 4 | 1194 | 1280 | - | - | |
| Chla6g05362 | 1281 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Chla6g05362 | 1281 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 333 | 375 | IPR001680 | GO:0005515(InterPro) | |
| Chla6g05362 | 1281 | Gene3D | - | 1194 | 1280 | IPR044938 | - | |
| Chla6g05362 | 1281 | FunFam | enhancer of mRNA-decapping protein 4 | 166 | 480 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chla6g05362 | K12616 | enhancer of mRNA-decapping protein 4 |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 41824 | Chla2g00362 | Chla6g05362 | |
| 41826 | Chla2g00370 | Chla6g05362 | |
| 42762 | Chla5g01300 | Chla6g05362 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chla | Chla-Chr2:10723535 | Chla6g05362 | Chla-Chr6:211548172 | dispersed | |
| Chla | Chla-Chr6:211548172 | Chla8g00370 | Chla-Chr8:8291551 | dispersed | |
| Chla | Chla-Chr1:245389239 | Chla6g05362 | Chla-Chr6:211548172 | transposed | |
| Chla | Chla-Chr1:245433497 | Chla6g05362 | Chla-Chr6:211548172 | transposed | |
| Chla | Chla-Chr4:37510949 | Chla6g05362 | Chla-Chr6:211548172 | transposed | |
| Chla | Chla-Chr4:103589145 | Chla6g05362 | Chla-Chr6:211548172 | transposed | |
| Chla | Chla-Chr5:236978518 | Chla6g05362 | Chla-Chr6:211548172 | transposed | |
| Chla | Chla-Chr7:9872248 | Chla6g05362 | Chla-Chr6:211548172 | transposed | |
| Chla | Chla-Chr8:31794323 | Chla6g05362 | Chla-Chr6:211548172 | transposed | |
| Chla | Chla-Chr9:91124366 | Chla6g05362 | Chla-Chr6:211548172 | transposed | |
| Chla | Chla-Chr5:41958059 | Chla6g05362 | Chla-Chr6:211548172 | wgd |