AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05369 ATGTTGGAAAGCAGATTGATTACAATTATAAAAAGAAGCAAATCAATCAGATCTTGTTCATTTTCATCATCAACAAATCGTTGTTTTTCGACTTTTAATCATCTTGCTAATAATACCAACACTAACACTATTGCTAGAAGCTGTTTTATCAATGGATTTAGATCATTTCATAATTTTAATAAGGGCACCTACAAACCATCTTTTAGGCACATGTCCACTTTAGCTGCAACCGCTATCAAGGAAAATAAGGAGACAGTGAAGATGCTTGTTACTGCTGGTCCTCATGCTCAGAAAGCAGTGGGAATTTGGCTTTTTGCATCCGCTGCATGGGTCTTCAGTATGGTTATTCTTGGTGGTGTCACACGGCTCACCCGATCTGGTCTTTCAATGACTGACTGGAAATTCACTGGCAGCCTTCCTCCTCTATCGGATGAAGATTGGGTGATTGAGTTTGAGAAATATAAACAGTCTCCCGAGTTCAAGCGTGTGAACAGAGGCATGAATATTGATGATTTTAAGTTTATATATTGGATGGAGTACGCTCATCGTATGTGGGGAAGGGCACTAGGCATCATGTTTGCTCTCCCATTTTCATATTTTATGCGGAAAGGTTATATAAATTTAAGGCTTGGAGTTAGACTCGCCGGTCTATTTGCTCTTGGTGGTGGGCAGGGACTGATTGGTTGGTGGATGGTCAAAAGTGGTTTAGAAGAGCCACCTTCAGAGTACTCCCAACCAAGAGTAAGTCCATACCGTCTTGCTGCTCATCTGACTTCAGCTTTTGCTATATACTGTGGACTATTCTGGACTGCTCTTTCTGTCGTCATGCCTGAACCTCCCACTGAATCACTAGCTTGGGTCAAAGGGGCTGCAAAAGTCAAAAGGTTTGCTCTTCCGGTTGGCATCCTTGTTGGTATAACTGCAGTCTCAGGAGCCTTTGTTGCAGGAAATGATGCGGGACATGCGTTTAATACTTTTCCAAAGATGGGTGATTCATGGATCCCGGAAGATGTTTTGAGTATGAAGCCACTTATTCGAAACTTCTTCGAGAACACAGCCACTGTGCAGCTTGATCATCGTATACTTGCAACTGCAACTCTAGCATCGATTACTGGTTTATGGTGGTCAACAAGAAAACTAGACTTACATCCTGCTATTCGTTCTTTGATCGGAAGTACGGTTGGAATGGCTGTTCTCCAGGTTACCTTGGGAATATCAACTCTTTTATCATATGTACCGGTTTCACTTGGCACTGCCCACCAAGCTGGGGCTTTGACCCTTTTGACTTTTATGCTTCTTCTCAATCATACCTTGCGCCGACCATCACAAATGCTTCTAAAATCACTCCCAGCAGTTGCCAAAACAATATGA 1371 42.45 MLESRLITIIKRSKSIRSCSFSSSTNRCFSTFNHLANNTNTNTIARSCFINGFRSFHNFNKGTYKPSFRHMSTLAATAIKENKETVKMLVTAGPHAQKAVGIWLFASAAWVFSMVILGGVTRLTRSGLSMTDWKFTGSLPPLSDEDWVIEFEKYKQSPEFKRVNRGMNIDDFKFIYWMEYAHRMWGRALGIMFALPFSYFMRKGYINLRLGVRLAGLFALGGGQGLIGWWMVKSGLEEPPSEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPTESLAWVKGAAKVKRFALPVGILVGITAVSGAFVAGNDAGHAFNTFPKMGDSWIPEDVLSMKPLIRNFFENTATVQLDHRILATATLASITGLWWSTRKLDLHPAIRSLIGSTVGMAVLQVTLGISTLLSYVPVSLGTAHQAGALTLLTFMLLLNHTLRRPSQMLLKSLPAVAKTI 456
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05369 456 Hamap Heme A synthase [ctaA]. 97 441 IPR023754 GO:0006784(InterPro)|GO:0016020(InterPro)|GO:0016653(InterPro)
Chla6g05369 456 PANTHER CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX15 50 454 IPR023754 GO:0005743(PANTHER)|GO:0006784(PANTHER)|GO:0006784(InterPro)|GO:0016020(InterPro)|GO:0016653(InterPro)|GO:0016653(PANTHER)
Chla6g05369 456 Pfam Cytochrome oxidase assembly protein 102 431 IPR003780 GO:0006784(InterPro)|GO:0016020(InterPro)|GO:0016653(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05369 K02259 heme a synthase [EC:1.17.99.9]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr6:211720324 Chla6g05373 Chla-Chr6:211789942 proximal