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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05419 ATGGCTTCCTTTGCTACAGCCGAAGTTTGTGACGCAAATGCATCCCACTTAGCAAGTGGTGATCTCCGAGCCCTTGCTCCCATATTCAAGATCTACGGACAATGTCGTGCTTTTTCAGGGCCTGTAGTCACGCTCAAAGTATTTGAGGACAATGTATTGGTTAGAGACCATCTCGAGACTAAAGGTGAAGGTAGGGTCCTTGTCATTGATGGTGGAGGAAGCATGAGATGTGCACTTGTGGGCGGCAACTTAGGGCAATTGGCTCAAAACATGGGATGGGCTGGGATTGTGGTCAATGGTTGTATCCGTGATGTTGATGAGATTAACGGGTGTGATATTGGGGTTCGAGCATTGGCTTCACATCCTCAGAAATCGAATAAAAGAGGCGTCGGTGAGAAGAATGTTCCCGTTCATATTGGAGGAACTTTGATCCATGATGGGGAATGGTTGTATGCAGATAGTGATGGGATTCTTGTGTCAAAAACTGAGTTGTCTTTATGA 501 46.11 MASFATAEVCDANASHLASGDLRALAPIFKIYGQCRAFSGPVVTLKVFEDNVLVRDHLETKGEGRVLVIDGGGSMRCALVGGNLGQLAQNMGWAGIVVNGCIRDVDEINGCDIGVRALASHPQKSNKRGVGEKNVPVHIGGTLIHDGEWLYADSDGILVSKTELSL 166
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05419 166 Pfam Aldolase-RraA 6 159 IPR005493 -
Chla6g05419 166 CDD RraA-family 7 160 IPR005493 -
Chla6g05419 166 Gene3D - 1 166 - -
Chla6g05419 166 PANTHER 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED 1 165 - -
Chla6g05419 166 SUPERFAMILY RraA-like 4 164 IPR036704 -
Chla6g05419 166 NCBIfam RraA family 6 160 IPR010203 GO:0008428(InterPro)|GO:0051252(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05419 K02553 regulator of ribonuclease activity A
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr6:213459410 Chla9g04165 Chla-Chr9:153255879 dispersed