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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05427 ATGGATTCCATGGTGTTTTGTTCAAAACCCATTTGGTTTCATTCCCAAATAAATCAATCCAAAACCCTTTTTACAAGTAGTAGGTCTATATCAATGTTTGCCGCCAAAAAAACCAGAGTTGTTTCACATCTTGAGTCTAGAGTTAATGGCTCTCTTTCCTCATCTGACCCTGATTCTTTATTTCTTGACCGGCAAAAAGCATTGGAAGCTGCAATGAATGACATTAACAGCTCATTTGGGAAAGGGAGTGTGACGAGGCTTGGTAGTCTTGGTGGAGCTCTTGTTGAAACATTTCCAAGTGGTTGTCTTCCCTTAGACCTTGCGTTAGGAGGTGGCCTTCCTAAAGGAAGAATTGTAGAGATTTACGGACCTGAAAGTAGTGGAAAGACCACTTTGGCACTACATGCCATTGCAGAAGTGCAGAAACTAGGAGGCAATGCGATGCTTGTTGATGCAGAGCATGCTTTTGATCCATCATATTCTAAAGCATTAGGAGTGGATGTGGAAAATTTAATTGTTTGCCAACCAGACAATGGAGAGATGGCACTTGAGATTGCAGACCGTATGTGTAGATCTGGTGCGGTTGATCTCATTTGCATTGACTCTGTCTCTGCTCTTACTCCACGAGCTGAGATTGAAGGGGAAATTGGAATGCAGCAAATGGGCTTGCAAGCACGTCTTATGAGTCAAGCATTACGTAAGATGTCAGGAAATGCATCTAAAGCTGGATGTACACTTATCTTTCTTAACCAAATAAGATACAAGATTGGAGTTTATTATGGAAATCCAGAAGTTACAAGTGGAGGTATCGCCTTAAAGTTTTTTGCATCTGTCAAAGGTGATGAGGACATCGGGCTTAAGGTCTCAAGACCATACAAGCAAGCGGAGTTTGAAATTATATTTGGAGAGGGAGCCAGCAAAATGGGATGTATACTGGACTGTGCGGAAATGATGGATATTGTTTTGAAAAAAGGCTCTTGGTATAGCTTCCGAGATCAAAGGTTGGGGCAAGGTAGAGACAGGGCGTTGCAGTACCTGCGAGAAAACCTTCCCCTTTGTGATGAAATAGAAAAGCTTGTGAGGTCAGCAATGGTAGATGGAACCGGGCAAGCAATTACGTCCTACGCTCGACATTCTACACCACTCATTGAAGAGGATGAATTACTAGAAGAACTACAGTGA 1182 42.39 MDSMVFCSKPIWFHSQINQSKTLFTSSRSISMFAAKKTRVVSHLESRVNGSLSSSDPDSLFLDRQKALEAAMNDINSSFGKGSVTRLGSLGGALVETFPSGCLPLDLALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAVDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVKGDEDIGLKVSRPYKQAEFEIIFGEGASKMGCILDCAEMMDIVLKKGSWYSFRDQRLGQGRDRALQYLRENLPLCDEIEKLVRSAMVDGTGQAITSYARHSTPLIEEDELLEELQ 393
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05427 393 SUPERFAMILY RecA protein, C-terminal domain 306 362 IPR023400 -
Chla6g05427 393 ProSiteProfiles RecA family profile 1. 94 252 IPR020588 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0140664(InterPro)
Chla6g05427 393 SMART AAA-5 115 290 IPR003593 GO:0016887(InterPro)
Chla6g05427 393 CDD RecA 95 307 - -
Chla6g05427 393 NCBIfam recombinase RecA 63 279 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chla6g05427 393 Gene3D - 306 378 - -
Chla6g05427 393 PANTHER RECA 287 371 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chla6g05427 393 ProSiteProfiles RecA family profile 2. 257 310 IPR020587 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Chla6g05427 393 Pfam recA bacterial DNA recombination protein 66 280 IPR049428 -
Chla6g05427 393 PRINTS RecA protein signature 151 180 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chla6g05427 393 PRINTS RecA protein signature 281 310 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chla6g05427 393 PRINTS RecA protein signature 185 214 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chla6g05427 393 PRINTS RecA protein signature 223 252 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chla6g05427 393 PRINTS RecA protein signature 335 352 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chla6g05427 393 Pfam RecA C-terminal domain 309 364 IPR049261 -
Chla6g05427 393 Gene3D - 93 282 IPR027417 -
Chla6g05427 393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 278 IPR027417 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05427 K03553 recombination protein RecA
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr5:295176483 Chla6g05427 Chla-Chr6:213636529 dispersed
Chla Chla-Chr6:213636529 Chla6g05430 Chla-Chr6:213732917 proximal