Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Chla6g05620	ATGGTGAAGACAACGTTAGGATGTGAACCTGTTGTTGGGTCTTTAACGCCGTCAAGAAAGAGGGATTATAGGGTCACTAATAGGTTACAAGAAGGCAAACGTCCTATATACGCTGTCGTTTTCAACTTCATTGATTCTCGTTATTTTAACGTCTTTGCTACTGTTGGTGGTAATCGTGTCACAGTGTACCAATGCCTTGAAGGTGGCGTTATTGCTGTACTTCAGTCCTACATCGATGAAGATAAGGATGAGTCTTTCTACACTGTGAGCTGGGCATGTGATGCTGACGGGCGACCATTGCTAGTTGCTGGAGGAATTAATGGCATAATCCGTGTCATTGATGCTGGAAATGAGAAGATACACAAGAGTTTCGTTGGTCACGGGGACTCGGTAAATGAAATCAGAACACAAGTACTAAGACCTTCTCTTGTGCTTTCTGCAAGTAAAGATGAATCTGTCCGTTTGTGGAATGTTGAAACTGGAATATGCATTTTGATATTTGCTGGAGCTGGTGGTCATCGCAATGAAGTGTTGAGTGTGGATTTTCATCCTTCAGATATATATCGTATTGCCAGTTGTGGTATGGATAACACCGTAAAGATATGGTCAATGAAAGAATTTTGGACGTATGTCGAGAGGTCTTTTACATGGGAGGGACTACCTTCACAATTTCCTACAAAATATGTGCAGTTTCCGGTCTTACTTGCTTCAATCCATACAAATTATGTCGACTGCAATAGGTGGCTTGGCGATTTCATGCTATCTAAGAGCGTTGATAACGAGTTCATATTATGGGAACCAAAGATGAAAGAGCACTCCCCAGGAGAGGGTACTGTAGATATCATTCAAAAATATCCCGTCCCTGAGTGTGACATTTGGTTTATTAAGCTTTCATGTGATTTCCATTTCAACGCAGCATCTATAGGGAACAGGGAAGGGAAAATCTTTGTATGGGAATTGCAGAGTAGCCCCCCTACTCTCATTGCAAGGTTATCTCATGTTCAATCCAAATCTCCCATCAGGCAAACTGCTATGTCGTTTGATGGAAGCACAATTCTTAGTTGCTGTGAAGATGGCACTATTTGGCGTTGGGATACAGTTGCAACCTCCTAG	1113	42.14	MVKTTLGCEPVVGSLTPSRKRDYRVTNRLQEGKRPIYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAVLQSYIDEDKDESFYTVSWACDADGRPLLVAGGINGIIRVIDAGNEKIHKSFVGHGDSVNEIRTQVLRPSLVLSASKDESVRLWNVETGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVERSFTWEGLPSQFPTKYVQFPVLLASIHTNYVDCNRWLGDFMLSKSVDNEFILWEPKMKEHSPGEGTVDIIQKYPVPECDIWFIKLSCDFHFNAASIGNREGKIFVWELQSSPPTLIARLSHVQSKSPIRQTAMSFDGSTILSCCEDGTIWRWDTVATS	370

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Chla6g05620	370	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	170	205	-	-
	Chla6g05620	370	Pfam	WD domain, G-beta repeat	172	203	IPR001680	GO:0005515(InterPro)
	Chla6g05620	370	Pfam	WD domain, G-beta repeat	122	157	IPR001680	GO:0005515(InterPro)
	Chla6g05620	370	Pfam	WD domain, G-beta repeat	333	365	IPR001680	GO:0005515(InterPro)
	Chla6g05620	370	SUPERFAMILY	WD40 repeat-like	26	365	IPR036322	GO:0005515(InterPro)
	Chla6g05620	370	Gene3D	-	19	368	IPR015943	GO:0005515(InterPro)
	Chla6g05620	370	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	124	161	-	-
	Chla6g05620	370	PRINTS	G protein beta WD-40 repeat signature	190	204	IPR020472	-
	Chla6g05620	370	PRINTS	G protein beta WD-40 repeat signature	352	366	IPR020472	-
	Chla6g05620	370	PRINTS	G protein beta WD-40 repeat signature	144	158	IPR020472	-
	Chla6g05620	370	ProSitePatterns	Trp-Asp (WD) repeats signature.	144	158	IPR019775	-
	Chla6g05620	370	SMART	WD40-4	324	365	IPR001680	GO:0005515(InterPro)
	Chla6g05620	370	SMART	WD40-4	160	203	IPR001680	GO:0005515(InterPro)
	Chla6g05620	370	SMART	WD40-4	67	114	IPR001680	GO:0005515(InterPro)
	Chla6g05620	370	SMART	WD40-4	117	157	IPR001680	GO:0005515(InterPro)
	Chla6g05620	370	ProSiteProfiles	Trp-Asp (WD) repeats profile.	170	205	IPR001680	GO:0005515(InterPro)
	Chla6g05620	370	ProSiteProfiles	Trp-Asp (WD) repeats profile.	124	166	IPR001680	GO:0005515(InterPro)
	Chla6g05620	370	FunFam	polycomb group protein FIE1	19	368	-	-
	Chla6g05620	370	PANTHER	POLYCOMB PROTEIN	8	366	IPR051243	GO:0000122(PANTHER)\|GO:0006342(PANTHER)\|GO:0031491(PANTHER)\|GO:0035098(PANTHER)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Chla6g05620	K11462	polycomb protein EED

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	1080047	Chla	Chla2g03013	Chla-Chr2:99688954	Chla6g05620	Chla-Chr6:222919032
	1080050	Chla	Chla2g03016	Chla-Chr2:99735093	Chla6g05620	Chla-Chr6:222919032
	1080065	Chla	Chla2g03032	Chla-Chr2:100279559	Chla6g05620	Chla-Chr6:222919032
	1082991	Chla	Chla2g06497	Chla-Chr2:253813544	Chla6g05620	Chla-Chr6:222919032
	1106736	Chla	Chla6g05620	Chla-Chr6:222919032	Chla9g00580	Chla-Chr9:12816016