AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chla6g05641 | ATGATAACGTCAATATTCACACGCACATTGAATCACACCATCACTCCTCATCACTCGTTACGTTGTTGTACTAGTATTATTATCAGTCGCCAGATGAGTACGAAAACTGAGAGTGTGGTTCATCGGTTAAAGAGTAGCGGATTGTTTCAAACCAAAGGTTTAATTGGTGGAAAATGGACTGATGCTTATGATGCCAAAACTTTTCAGGTTAACAACCCTGCTAGTGGTGATGTTATAGCTTCAGTTGCATGCATGGGTGAGAGGGAAACAAAAGATGCAATTGGTTCAGCATATGATGCTTTTACCCATTGGAGCAAGCTTACTGCTGCTGCTAGGAGTAGTCACCTACGTAACTGGTATAACTTACTGATTAAACATAAAGAAGAGCTTGGACAACTTATAACTTTGGAGCAAGGAAAACCTCTAAAAGAATCCATTGGGGAGGTTACATATGGGGCTAGTTTCATAGAGTACTTTGCAGAGGAGGCAAAACGTGTTTATGGTGATATAATACCCTCACCTTTGCCTGATCGCCGGCTTTTTGTTTTAAAGCAGCCTGTTGGTGTGGTTGCTGCCATCACTCCATGGAATTTCCCTTTAGCAATGATCACTAGGAAGGTTGGACCAGCTCTTGCATGTGGGTGCACTGTGGTCATAAAGCCCTCTGAGCTCACACCATTGACTGCCTTAGCAGCAGCTGAGCTTGCCCTTCAAGCAGGAATCCCACCAGGCGTCTTGAATGTGGTCATGGGAGATGCTATCAGTATAGGAACATCATTACTTGAAAGCCCACAGGTAAGGAAAATAACATTTACTGGTTCAACAGCAGTTGGAAAGAAATTAATGGCTGGTGCAGCTGATACTGTCAAAAAGGTATCTCTTGAACTTGGTGGTAATGCACCGTGCATAATCTTCGATGATGCTGATCTGGAAGTGGCACTAAAAGGGAGTTTGGCAACCAAATTCCGTAATACTGGACAAACTTGCGTCTGCGCAAACAGAATACTTGTGCAAGAAGGCATATATGAGAAATTTACGAGTGCCTTTTCAAAGGCTGTTCAGGACCTTAAAGTTGGCAACGGTTTTAGTGAAGGTGTGGTCCAGGGACCACTTATCAACGAGGCTGCTGTAGAGAAGGTTGATTCGTTTGTGCAAGATGCTGTCTCAAAGGGAGCAAGAGTTCTTCTCGGTGGTAAGAGGCACAGCCTAGGGTTTACTTTTTACGAGCCAACAATTATAGGTGATGTCAAGAATGAGATGCTCATAGCAAGGCAGGAAGTATTTGGACCTGTTGCACCTGTTATACGGTTTAAAACCGAAGAAGAAGCTATCCAGATCGCTAATGACACTCATGCAGGATTAGCTGCTTACATATTCACAAACAGTATTAAGCGTTCGTGGCGTGTGTCTGAAGCTCTTGAATATGGTATTGTTGGAGTCAATGAGGGATTGGTTTCTACAGAGGTGGCTCCTTTTGGAGGTTTTAAGCAGTCTGGTTTAGGACGTGAAGGCTCCAAATATGGATTGGATGAGTATCTTGAGATCAAGTATGTTTGTATGGGAAATATGGGCTGA | 1575 | 43.3 | MITSIFTRTLNHTITPHHSLRCCTSIIISRQMSTKTESVVHRLKSSGLFQTKGLIGGKWTDAYDAKTFQVNNPASGDVIASVACMGERETKDAIGSAYDAFTHWSKLTAAARSSHLRNWYNLLIKHKEELGQLITLEQGKPLKESIGEVTYGASFIEYFAEEAKRVYGDIIPSPLPDRRLFVLKQPVGVVAAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELALQAGIPPGVLNVVMGDAISIGTSLLESPQVRKITFTGSTAVGKKLMAGAADTVKKVSLELGGNAPCIIFDDADLEVALKGSLATKFRNTGQTCVCANRILVQEGIYEKFTSAFSKAVQDLKVGNGFSEGVVQGPLINEAAVEKVDSFVQDAVSKGARVLLGGKRHSLGFTFYEPTIIGDVKNEMLIARQEVFGPVAPVIRFKTEEEAIQIANDTHAGLAAYIFTNSIKRSWRVSEALEYGIVGVNEGLVSTEVAPFGGFKQSGLGREGSKYGLDEYLEIKYVCMGNMG | 524 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chla6g05641 | 524 | SUPERFAMILY | ALDH-like | 35 | 521 | IPR016161 | GO:0016491(InterPro) | |
| Chla6g05641 | 524 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 294 | 301 | IPR029510 | GO:0016491(InterPro) | |
| Chla6g05641 | 524 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 65 | 512 | IPR016162 | GO:0016491(InterPro) | |
| Chla6g05641 | 524 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 43 | 523 | IPR050740 | GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER) | |
| Chla6g05641 | 524 | FunFam | Succinate-semialdehyde dehydrogenase I | 65 | 308 | - | - | |
| Chla6g05641 | 524 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 298 | 487 | IPR016163 | GO:0016620(InterPro) | |
| Chla6g05641 | 524 | Pfam | Aldehyde dehydrogenase family | 59 | 518 | IPR015590 | GO:0016491(InterPro) | |
| Chla6g05641 | 524 | CDD | ALDH-F5-SSADH-GabD | 70 | 520 | - | - | |
| Chla6g05641 | 524 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 322 | 333 | IPR016160 | GO:0016491(InterPro) | |
| Chla6g05641 | 524 | NCBIfam | succinate-semialdehyde dehydrogenase | 70 | 516 | IPR010102 | GO:0009013(InterPro)|GO:0009450(InterPro) | |
| Chla6g05641 | 524 | FunFam | Aldehyde dehydrogenase, putative | 490 | 516 | - | - | |
| Chla6g05641 | 524 | FunFam | Succinate-semialdehyde dehydrogenase I | 298 | 487 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chla6g05641 | K17761 | succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] | ||||
| Chla6g05641 | K00135 | succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chla | Chla-Chr6:130027384 | Chla6g05641 | Chla-Chr6:223495942 | dispersed | |
| Chla | Chla-Chr6:185504946 | Chla6g05641 | Chla-Chr6:223495942 | dispersed | |
| Chla | Chla-Chr6:223495942 | Chla7g04875 | Chla-Chr7:223718863 | dispersed | |
| Chla | Chla-Chr6:223495942 | Chla6g05642 | Chla-Chr6:223512102 | tandem |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Chla1g02524 | . | 79 | 607 | Aldehyde Dehydrogenase gene family | AT2G14170 | 66.478 | 0.0 | 746.0 | |
| Chla7g04875 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 80.407 | 0.0 | 910.0 | |
| Chla3g05703 | . | 1 | 495 | Aldehyde Dehydrogenase gene family | AT2G24270 | 78.427 | 0.0 | 800.0 | |
| Chla6g03788 | . | 215 | 260 | Aldehyde Dehydrogenase gene family | AT3G48000 | 47.826 | 9.32e-08 | 48.9 | |
| Chla2g06721 | . | 277 | 389 | Aldehyde Dehydrogenase gene family | AT3G48000 | 48.696 | 2.73e-25 | 98.6 | |
| Chla2g02562 | . | 339 | 525 | Aldehyde Dehydrogenase gene family | AT2G14170 | 59.893 | 1.60e-67 | 219.0 | |
| Chla1g07245 | . | 6 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 64.113 | 0.0 | 681.0 | |
| Chla8g03388 | ACH | 1 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 51.69 | 0.0 | 539.0 | |
| Chla1g07247 | . | 7 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 68.485 | 0.0 | 712.0 | |
| Chla7g05017 | ACH | 107 | 545 | Aldehyde Dehydrogenase gene family | AT5G62530 | 81.093 | 0.0 | 769.0 | |
| Chla5g06518 | . | 4 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 53.75 | 0.0 | 555.0 | |
| Chla2g02577 | . | 339 | 441 | Aldehyde Dehydrogenase gene family | AT2G14170 | 48.544 | 3.78e-23 | 90.1 | |
| Chla2g03004 | . | 155 | 308 | Aldehyde Dehydrogenase gene family | AT1G79440 | 67.532 | 1.95e-58 | 189.0 | |
| Chla7g03836 | . | 260 | 316 | Aldehyde Dehydrogenase gene family | AT3G48000 | 73.684 | 4.36e-20 | 89.7 | |
| Chla5g06517 | . | 4 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 51.139 | 2.53e-179 | 509.0 | |
| Chla3g06557 | . | 167 | 285 | Aldehyde Dehydrogenase gene family | AT1G74920 | 59.016 | 5.57e-36 | 127.0 | |
| Chla3g04281 | . | 251 | 380 | Aldehyde Dehydrogenase gene family | AT5G62530 | 60.305 | 2.95e-47 | 162.0 | |
| Chla7g04999 | . | 25 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 72.313 | 0.0 | 835.0 | |
| Chla1g05534 | . | 213 | 247 | Aldehyde Dehydrogenase gene family | AT1G23800 | 57.143 | 3.34e-06 | 43.1 | |
| Chla6g01598 | . | 4 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 68.273 | 0.0 | 711.0 | |
| Chla6g05642 | . | 34 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 74.39 | 0.0 | 765.0 | |
| Chla8g02892 | . | 26 | 534 | Aldehyde Dehydrogenase gene family | AT1G23800 | 71.513 | 0.0 | 731.0 | |
| Chla1g03860 | . | 441 | 516 | Aldehyde Dehydrogenase gene family | AT3G48000 | 65.789 | 7.06e-27 | 110.0 | |
| Chla1g05491 | . | 1 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 87.298 | 0.0 | 905.0 | |
| Chla2g01181 | . | 254 | 298 | Aldehyde Dehydrogenase gene family | AT3G24503 | 64.444 | 1.06e-10 | 56.2 | |
| Chla1g07246 | . | 7 | 482 | Aldehyde Dehydrogenase gene family | AT3G24503 | 66.387 | 0.0 | 654.0 | |
| Chla1g07248 | . | 7 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 68.485 | 0.0 | 714.0 | |
| Chla1g04928 | . | 188 | 317 | Aldehyde Dehydrogenase gene family | AT3G66658 | 56.716 | 8.76e-40 | 138.0 | |
| Chla3g05683 | . | 1 | 495 | Aldehyde Dehydrogenase gene family | AT2G24270 | 79.234 | 0.0 | 800.0 | |
| Chla2g04940 | . | 1 | 545 | Aldehyde Dehydrogenase gene family | AT3G66658 | 77.064 | 0.0 | 865.0 | |
| Chla8g02887 | . | 116 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 78.723 | 0.0 | 734.0 | |
| Chla5g06565 | ACH | 91 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 36.896 | 2.17e-77 | 242.0 | |
| Chla5g02814 | . | 6 | 453 | Aldehyde Dehydrogenase gene family | AT1G44170 | 65.625 | 0.0 | 627.0 | |
| Chla5g06555 | . | 4 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 50.0 | 8.94e-165 | 471.0 | |
| Chla5g00650 | . | 69 | 187 | Aldehyde Dehydrogenase gene family | AT1G79440 | 44.538 | 1.12e-22 | 91.7 | |
| Chla7g04164 | . | 8 | 484 | Aldehyde Dehydrogenase gene family | AT4G36250 | 61.216 | 0.0 | 612.0 | |
| Chla6g05378 | . | 177 | 316 | Aldehyde Dehydrogenase gene family | AT3G66658 | 72.143 | 1.10e-65 | 210.0 | |
| Chla8g05745 | . | 394 | 518 | Aldehyde Dehydrogenase gene family | AT3G48000 | 65.6 | 3.08e-55 | 182.0 | |
| Chla4g01787 | . | 200 | 295 | Aldehyde Dehydrogenase gene family | AT3G24503 | 66.667 | 1.21e-33 | 135.0 | |
| Chla1g06488 | . | 33 | 246 | Aldehyde Dehydrogenase gene family | AT3G48170 | 51.852 | 1.22e-61 | 204.0 | |
| Chla2g05887 | ACH | 23 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 82.022 | 0.0 | 932.0 | |
| Chla5g06557 | ACH | 4 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 51.667 | 0.0 | 528.0 | |
| Chla6g05641 | . | 18 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 76.667 | 0.0 | 800.0 | |
| Chla3g01013 | . | 360 | 518 | Aldehyde Dehydrogenase gene family | AT3G48000 | 59.748 | 3.26e-60 | 198.0 | |
| Chla7g04917 | . | 5 | 501 | Aldehyde Dehydrogenase gene family | AT1G74920 | 78.471 | 0.0 | 849.0 |