AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05661 ATGAACATCGAAATACACGGTCGTCACGCGCTACTCTTCGACGACGACGCCACATCAGCGTTCGTAAACTCCGAAGACGCACTCGTCGAATGGAACTCACTCTTAATCGACCGATACGACGTCCGGCATCTCCTCTCCGGCCCTCCGCCGTCACGACGACGGCGTAATCCACAAACGTCATCACATTCGTCTTCTGCTGATGCTGAGATTGATTATGAACGGTATCTGGATTTACCGTCTGAAAATGAAGACCACGAAGAAGATGCAAATCCGGAACCTGTTGGTGGATTCAATGCTGTTCCTTTTTCTTATGGAAATTACGAGGGTTCTAGTGAACAAAAGATTGCTGAGACTGAATCGGAAATACCTCAATTTCATCCCCCTTTCCCTGTTCCTGACAGTCTGGTTCAACACTTGCCTTCTACAGAGAAAGTACATCAGATTATTGCAAGGACCGCTCTTTTTGTCAGTAAAAATGGAGGTCAATCTGAGATTGTTTTGAGGGTGAAGCAAGGAGACAATCCTACCTTTGGGTTCTTAATGCCTGACCATCACCTACATCCGTACTTCAGGTTTCTTGTGGATCACCAAGATCTTCTTCAGTCAAAAGAGGACAAACAGACTGAAAATGAGGAAACATCCAATACTGGAGCATTGTCTTTACTTGGTTCTGTTTATGGCACTGGGGAGGATGATGATGTTGGAACAGAGCATGCATCATCATCATCTAAAGAGGTCGTGGATGTAGATGCTGCAATGTTGCCAGCTGGTAAAGACGAGCCTGTTTCAAAGCAGTCGATTTCTTCCAAGGAAGATGTTCTTATAATAAAAAGGAATTCTTTATCAAATGTTTTGAAGCCTGTACGTACTCGCAGTCTGAGGAAAGATGATTTCTCAGGTTCAGTCTCTGCTGTTCCTGATAAGTTACGTGCTTCTTCTCTTCCCCCAATTCCCAAGAATGAGCATATTCTTGTGGATCCTTCATCCGAAATGAAACTGCTGGTTGACAAGATAGTTGAGTTCATCATCAAGAATGGGAGGCAGTTTGAGACAGTACTTATGGAACAAGACCGTGGTCATGGAAGATTCCCATTCTTAATCCCATCTAATATATTTCATCCGTACTATTTAAAGGTTCTCCAGAAAGCCCAGGAGACGAAGTTAACGGTGAAGAGTTTCCACAATGAGAAGGAAGTTTCCAGAGGACATATCTCAAACAAGAAACTTAAGGTTGATGAGAAATCTTTGATGGAACCTGATGATATACCACTTGATTCTGAAAGGAAAGAGAAGTTTAAGATGGTAATTAACAAATCTAAAAGGGAAGAATCAGATGTGCCAGTTAAGGCCACAGAACAGTCACCTGGAATCCAGGTGGATGCCACTCAAGCAGCAGCTATTCTTCAGGCTGCTACAAGAGGCATTAAGAGTCCAAATTTAGGAAATTTATTTGGACAACCCTCTAATGTAGCCAATTCCTCGGACACACATTTGACTCATGAGCAGAAATTGAAGGCTGAGAGGCTTAAAAGAGCTAAGATGTTTGTGGCTCAGCTGAAAAGTGGAGCTGCTCCATCAAAAACTGAACCCTCGCGTGGCGTATCAGCTGAGCCACAAGGATCAGCGGCTGCAAAAAGTCAAAGCACAACCCCTATAGATTTTCATACTAAAGACGAGATGGTAAAAACAGAGAAGATAGTAAAAACAGAAGAAGAACATTTGAATGATGAAAAACGAGCAAAGAGGAAATACCGTGCTAGGAAAGATGAAGAAGGTGACACATCAGAAGATGATGACGACTTGGTTGATGAGAGAGAAGAAAAAAGGTCACATAGACACCGTATAGAAAAACATCAATCGCATGATCATGTTAAAAAACACCGATCACATCGTTCTTCTCGTAAACATGATGAAGAAAGGGATCGTGATTACTCGAGGAAAAATAAACATCAATCATCTAGCTCTTACGAAGATGATGAACACGAAAGTGAACATGAATATGCCAGAAAGAAGCACCGGTCTCATCGTTCTTCACATGATGAAGATGAAGTTGACAGTGACGATAAATATTCGAGGAAAAAGAGAACACATAGATCTCACAAGTCTTCTCATCACAGAAGAGATAAACATAAGCATAGGAAAAGTCACTCTTATAGGCATAGACAGAAGCCTGATGTCTCTTCAGAAGAAGAGCTAAGGGATCATAATAAGGCTGAAAAACATAAACAGGGTTCAAATTCGGAGAAAGAAGAACTGGAAGAGGGAGAGATCAGTTCGAAATTGTCGGGTCAGTCCAGAGGGGGTCCATTTGTTAATGGTGCTAGCAGAGAACCATCGGTCGATGTATCGAGTCAAGATAGGAGACCACTGACTCAACCTGTAGAGACAGCTGAGGTTCCTGATGATCTTAGGGCCAAAGTGAGAGCAATGTTGATGTCCACATTGTAA 2448 42.4 MNIEIHGRHALLFDDDATSAFVNSEDALVEWNSLLIDRYDVRHLLSGPPPSRRRRNPQTSSHSSSADAEIDYERYLDLPSENEDHEEDANPEPVGGFNAVPFSYGNYEGSSEQKIAETESEIPQFHPPFPVPDSLVQHLPSTEKVHQIIARTALFVSKNGGQSEIVLRVKQGDNPTFGFLMPDHHLHPYFRFLVDHQDLLQSKEDKQTENEETSNTGALSLLGSVYGTGEDDDVGTEHASSSSKEVVDVDAAMLPAGKDEPVSKQSISSKEDVLIIKRNSLSNVLKPVRTRSLRKDDFSGSVSAVPDKLRASSLPPIPKNEHILVDPSSEMKLLVDKIVEFIIKNGRQFETVLMEQDRGHGRFPFLIPSNIFHPYYLKVLQKAQETKLTVKSFHNEKEVSRGHISNKKLKVDEKSLMEPDDIPLDSERKEKFKMVINKSKREESDVPVKATEQSPGIQVDATQAAAILQAATRGIKSPNLGNLFGQPSNVANSSDTHLTHEQKLKAERLKRAKMFVAQLKSGAAPSKTEPSRGVSAEPQGSAAAKSQSTTPIDFHTKDEMVKTEKIVKTEEEHLNDEKRAKRKYRARKDEEGDTSEDDDDLVDEREEKRSHRHRIEKHQSHDHVKKHRSHRSSRKHDEERDRDYSRKNKHQSSSSYEDDEHESEHEYARKKHRSHRSSHDEDEVDSDDKYSRKKRTHRSHKSSHHRRDKHKHRKSHSYRHRQKPDVSSEEELRDHNKAEKHKQGSNSEKEELEEGEISSKLSGQSRGGPFVNGASREPSVDVSSQDRRPLTQPVETAEVPDDLRAKVRAMLMSTL 815
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05661 815 MobiDBLite consensus disorder prediction 520 801 - -
Chla6g05661 815 ProSiteProfiles SURP motif repeat profile. 334 376 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Chla6g05661 815 MobiDBLite consensus disorder prediction 634 692 - -
Chla6g05661 815 SMART DRY-EERY-2 1 108 IPR019147 -
Chla6g05661 815 MobiDBLite consensus disorder prediction 614 633 - -
Chla6g05661 815 SUPERFAMILY Surp module (SWAP domain) 124 195 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Chla6g05661 815 Pfam Alternative splicing regulator 3 87 IPR019147 -
Chla6g05661 815 SMART surpneu2 332 385 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Chla6g05661 815 SMART surpneu2 146 199 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Chla6g05661 815 MobiDBLite consensus disorder prediction 532 554 - -
Chla6g05661 815 SUPERFAMILY Surp module (SWAP domain) 311 381 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Chla6g05661 815 MobiDBLite consensus disorder prediction 45 71 - -
Chla6g05661 815 MobiDBLite consensus disorder prediction 721 757 - -
Chla6g05661 815 Gene3D Surp module 318 388 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Chla6g05661 815 MobiDBLite consensus disorder prediction 777 791 - -
Chla6g05661 815 Coils Coil 567 587 - -
Chla6g05661 815 Gene3D Surp module 141 196 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Chla6g05661 815 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 3 798 IPR040397 GO:0000395(PANTHER)
Chla6g05661 815 MobiDBLite consensus disorder prediction 693 720 - -
Chla6g05661 815 Pfam Surp module 147 195 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Chla6g05661 815 Pfam Surp module 334 381 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Chla6g05661 815 MobiDBLite consensus disorder prediction 52 66 - -
Chla6g05661 815 MobiDBLite consensus disorder prediction 555 592 - -
Chla6g05661 815 ProSiteProfiles SURP motif repeat profile. 148 190 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05661 - -