AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05685 ATGGGTTATGAAAGAAGATCAACAACAAAAACAGATATGAATGATGCCTTGTTATTAACAACTATGTGTCTCATTGGTTTATCTGTTGATGTTCATATTAAAGATGGCTCTGTTTATTCTGGCATTTTTCATACTGTTTCTGTTAATGATCCCTATGCTATCGTGTTGAAGCGAGCAAGGATGACCAAGAAAGGGAAATGCAGTTCAAATGTGGCCAATGAGGAGGTGATAGCCACACTAATTATCCAGTCAGAAGATCTTGTTCAAGTTGTTGCCAAGAGAGAGATGCTTCCAGCAGATGGTTTTGTTGGACATGAAACCGGGGACGTTACAGGGGCTGTTGCTTGCACCTTTCCGTCTAATGGGAACCCATTGAAAGAAACAAACAAAATGACTAACAAGTCAAATGTTGGTCAACCACATACCAATAAAACAAAAGGCTCGTCTGGAACTGAGAACGGGTTAGCTAATGGATTAAAACCCGATATCGCTGTTCAGTCAACCAATGCTCTGCAAGTAAATAAAAATGCAGACACTGTTCCTTCCGCACCTTCTGCCACCGTCTCTTCATCAACTCCATGTGAGGCCGTCACTACAAAAGTCTCAAATTCTAATCGAGCTCCTAAGGAATTTAAACTTAATCCGGGAGCAAAGACATTTTCTCCATCATTTCCAAATAAAAGATCAGCAACTCCTCAAGCAATACCATCCAGTGCAAATCTCGCATACATCCCCGACAATTATCATGTGGGTCCGGTTGCTAGTCCACAGCCGGAATTTGCAATCAACCCGTATGCTCCTCGGTCAGTGCCTGCTAAGTTTGTTCCATATGGAGGCAACGATGTACAACATCCTCCCCCTATTCTTGGATATAGGAGTCAGCCAGTTAGAAATGGTGGACAATATCATCTTCCGGTTCAAACGGCACCTGCTTATGTCCAGCCAAGCCCCCAGAATGTTATGGTTGGAAGATTGGGACCGGTTGTGTATGTTCATCCAGTTTCTCAAGACATGGTCCCGGGCACCAATGGCTTCCCTCAAATGTCTACTTGCTCTATTTTAACACCACATCAAGTCCATCATGTCCCTAAACACCAAGGAAATGCAACAGCTCAAGCTTTACAGCTGTGTGCACCTCCTTCGTTTATAGGAGGTGGTGGTCAGCCACCGTTTGTTATGCCAACTCACATTCCGATTTCACAACCGCCTTATCCTATGATCCGTCCAATCTCGGTCCCAGGGTCTAACGGCTTCTTCGTATCGAAGTTTTCTTGA 1275 43.92 MGYERRSTTKTDMNDALLLTTMCLIGLSVDVHIKDGSVYSGIFHTVSVNDPYAIVLKRARMTKKGKCSSNVANEEVIATLIIQSEDLVQVVAKREMLPADGFVGHETGDVTGAVACTFPSNGNPLKETNKMTNKSNVGQPHTNKTKGSSGTENGLANGLKPDIAVQSTNALQVNKNADTVPSAPSATVSSSTPCEAVTTKVSNSNRAPKEFKLNPGAKTFSPSFPNKRSATPQAIPSSANLAYIPDNYHVGPVASPQPEFAINPYAPRSVPAKFVPYGGNDVQHPPPILGYRSQPVRNGGQYHLPVQTAPAYVQPSPQNVMVGRLGPVVYVHPVSQDMVPGTNGFPQMSTCSILTPHQVHHVPKHQGNATAQALQLCAPPSFIGGGGQPPFVMPTHIPISQPPYPMIRPISVPGSNGFFVSKFS 424
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05685 424 MobiDBLite consensus disorder prediction 121 159 - -
Chla6g05685 424 PANTHER ATAXIN 2-RELATED 134 406 IPR045117 GO:0003723(InterPro)|GO:0003729(PANTHER)|GO:0010494(PANTHER)|GO:0034063(PANTHER)
Chla6g05685 424 MobiDBLite consensus disorder prediction 121 155 - -
Chla6g05685 424 MobiDBLite consensus disorder prediction 178 209 - -
Chla6g05685 424 Pfam Ataxin 2 SM domain 14 93 IPR025852 -
Chla6g05685 424 MobiDBLite consensus disorder prediction 219 233 - -
Chla6g05685 424 MobiDBLite consensus disorder prediction 178 233 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05685 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1106779 Chla Chla6g05685 Chla-Chr6:225174508 Chla6g05699 Chla-Chr6:225665881