Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Chla6g05714	ATGTTGTCTTTCATCTCATCCACAACACCAACACAAACACCAGCCTTAACTAACAGAACCACCACAAGAGCCGCTTTTCTCAAACCGCATCCTATACATCTCAACAGAACCGGGTTTTGTTCATCTAAACCGGTCTGTGTCATTTCTGATAAATCAATGTCGGCGGTTCATGTTAATGATGAACCGGCGGCGGCGGTTCATGAGCGGCCTGATTTATTTGGCCGGTTTGGGAAATATGGTGGGAAGTATGTTCCTGAGACATTAATGTTTGCTTTAACTGAACTTGAATCTGCTTTTAAGGCTCTTGCTACTGACCACCAGTTTCAGAAGGAATTGGATGGGATATTGAAGGATTATGTTGGTAGGGAAAGCCCTCTTTATTTTGCAGAAAGACTTACCGAACACTATAAACGTCCCAACGGTGAAGGACCAGAAATATACCTTAAGAGGGAAGATCTTAACCATACTGGTGCACATAAGATCAATAATGCGGTTGCACAAGCGTTGTTGGCCAAGAAGTTAGGGAAAGAGCGTATCATTGCTGAAACTGGTGCTGGTCAGCATGGAGTTGCAACCGCAACTGTATGTGCGCGGTTTGGGTTGCAGTGTATTATTTATATGGGTGCTCAAGATATGGAAAGACAAGCTCTAAACGTGTTCAGAATGCGGCTCCTTGGAGCAGAGGTCAGAGCAGTTCATTCGGGGACAGCCACACTAAAGGATGCCACATCAGAGGCTATACGTGACTGGGTGACCAACGTGGAAACAACCCATTATATCTTAGGTTCTGTTGCCGGCCCACATCCCTACCCCATGATGGTACGCAAGTTCCATGCAGTAATTGGTAAAGAAACAAGAAAACAAGCATTGGAAAAATGGGGTGGAAAACCAGATGTGCTGGTTGCGTGTGTTGGTGGAGGATCAAATGCTATGGGCCTATTTCATGAGTTTGTTGATGACAAAGAAGTTAGGTTAATTGGTGTAGAGGCTGCAGGTCATGGTTTAGATAGTGGAAAACATGCAGCAACTTTAACACTAGGTGAGGTTGGAGTGTTGCATGGGGCTATGAGCTATTTGTTGCAAGATGACGATGGTCAAATCATCGAGCCTCACTCTATTAGTGCAGGGCTGGACTACCCAGGAGTGGGACCAGAGCATAGCTTTTTGAAAGACATAGGCCGAGCCGAATATCATAGCGTCACGGACGTGGAAGCATTGGAAGCTTTTAAAAGACTGTCTAGACTAGAGGGTATAATCCCGGCACTCGAGACATCTCATGCACTCGCCTATCTTGAGAAACTGTGTCCAACTTTAGCAAATGGAACCAAGGTTGTGCTGAACTGTAGTGGTAGAGGAGACAAAGATGTTCATACTGCCATCAAGTATCTGCAGGTTTGA	1398	45.28	MLSFISSTTPTQTPALTNRTTTRAAFLKPHPIHLNRTGFCSSKPVCVISDKSMSAVHVNDEPAAAVHERPDLFGRFGKYGGKYVPETLMFALTELESAFKALATDHQFQKELDGILKDYVGRESPLYFAERLTEHYKRPNGEGPEIYLKREDLNHTGAHKINNAVAQALLAKKLGKERIIAETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRKFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVDDKEVRLIGVEAAGHGLDSGKHAATLTLGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDIGRAEYHSVTDVEALEAFKRLSRLEGIIPALETSHALAYLEKLCPTLANGTKVVLNCSGRGDKDVHTAIKYLQV	465

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Chla6g05714	465	NCBIfam	tryptophan synthase subunit beta	74	462	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Chla6g05714	465	Gene3D	-	76	278	IPR036052	-
	Chla6g05714	465	SUPERFAMILY	Tryptophan synthase beta subunit-like PLP-dependent enzymes	70	463	IPR036052	-
	Chla6g05714	465	FunFam	Tryptophan synthase beta chain	122	276	-	-
	Chla6g05714	465	ProSitePatterns	Tryptophan synthase beta chain pyridoxal-phosphate attachment site.	153	167	IPR006653	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Chla6g05714	465	CDD	Trp-synth-B	90	458	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Chla6g05714	465	Hamap	Tryptophan synthase beta chain [trpB].	69	463	IPR023026	GO:0000162(InterPro)\|GO:0004834(InterPro)
	Chla6g05714	465	MobiDBLite	consensus disorder prediction	1	20	-	-
	Chla6g05714	465	PIRSF	Trp-syn-beta	61	465	IPR023026	GO:0000162(InterPro)\|GO:0004834(InterPro)
	Chla6g05714	465	Gene3D	-	121	456	IPR036052	-
	Chla6g05714	465	PANTHER	TRYPTOPHAN SYNTHASE-RELATED	54	464	IPR023026	GO:0000162(PANTHER)\|GO:0000162(InterPro)\|GO:0004834(InterPro)\|GO:0004834(PANTHER)\|GO:0005737(PANTHER)\|GO:0009570(PANTHER)
	Chla6g05714	465	FunFam	Tryptophan synthase beta chain	277	456	-	-
	Chla6g05714	465	Pfam	Pyridoxal-phosphate dependent enzyme	122	450	IPR001926	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Chla6g05714	K01696	tryptophan synthase beta chain [EC:4.2.1.20]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	41858	Chla2g00810	Chla6g05714

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	1078093	Chla	Chla2g00810	Chla-Chr2:23876807	Chla6g05714	Chla-Chr6:226512776
	1087329	Chla	Chla3g03753	Chla-Chr3:164483190	Chla6g05714	Chla-Chr6:226512776
	1097281	Chla	Chla5g01152	Chla-Chr5:37954243	Chla6g05714	Chla-Chr6:226512776
	1102767	Chla	Chla6g00380	Chla-Chr6:8579910	Chla6g05714	Chla-Chr6:226512776
	1102768	Chla	Chla6g00381	Chla-Chr6:8608007	Chla6g05714	Chla-Chr6:226512776