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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05717 ATGGCTCAAACACTGGAAGCCATCAAGGGTGGTGGTGGATCCATCAAAGTTGGAACCACCGGCACCATCAATGCCTTAATGTCAAGGGAACTACAATCGATCAAAGTTGCATCTCCAAGGGCAGTCCCATTGACACTCAAATCTCCAAAACGAGCCTTGGAACCTAATGAGGCTACTACGAGTACGACTCCTAAATCAAGTGTACAATCAGATGAAGCAAGCACTAGCAGCAGCGGTAATACAATGACTGAAAAACACACCAGTGCTCCTCATAAAACCAAGCACTATCATGCTAGAAGAGATAGTCGAAATCCTTTTCTTCGTTCTGATAGTGCATCAGTTGATGGAAATGGAACTCCTAATCGTAGGAAGAATGATAAGAAGGGGTCTTGCATGGTTGAAATAGTGGACGTGAAATGTGGAGTTCCTGATAAAATGTGGGCGAATCCCATAACTAATAAGCTGAAGAAATTCACTTTCTCGAAGCTCTCTGAAACCAATGGCGTTAAGTAA 513 43.27 MAQTLEAIKGGGGSIKVGTTGTINALMSRELQSIKVASPRAVPLTLKSPKRALEPNEATTSTTPKSSVQSDEASTSSSGNTMTEKHTSAPHKTKHYHARRDSRNPFLRSDSASVDGNGTPNRRKNDKKGSCMVEIVDVKCGVPDKMWANPITNKLKKFTFSKLSETNGVK 170
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05717 170 PANTHER BNAA10G09140D PROTEIN 1 167 - -
Chla6g05717 170 MobiDBLite consensus disorder prediction 36 130 - -
Chla6g05717 170 MobiDBLite consensus disorder prediction 54 86 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05717 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1072330 Chla Chla1g01969 Chla-Chr1:75506514 Chla6g05717 Chla-Chr6:226560360
1078094 Chla Chla2g00811 Chla-Chr2:23889861 Chla6g05717 Chla-Chr6:226560360
1097714 Chla Chla5g01674 Chla-Chr5:54576910 Chla6g05717 Chla-Chr6:226560360