AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05750 ATGCAGCAACCAAACAAAACCCTTGAATCAGACCTCCCATCACTCGCCACAATCAAAGTCAAATCATCCTCCCCACGTTTCCGATCAACCACCACTTCATCAACCGACACACCAACCGCCGGAGCCCAACGTCGTATCGGCATCGCAGTCGACTTATCCGACGAATCCGCATTCGCTGTCAAATGGGCCGTTCACCAGTACCTCCGTCCCGGCGACGCCGTGATCCTAATCCACGTCCGGCCCACTTCGGTCCTTTACGGGGCCGATTGGGGCTCCGTGGATTTAGCACTTTCTGACAACGACCCAGATGAACAAACTAAAGAGAAGCTGGAAAATGACTTTGATTTGTTCACTAGTAATAAAAGTGCTGATATAGCTGGGCCGTTAGTTGAGGCCGGGATACCGTATAAGATACATATAGTGAAGGATCATGATATGAAGGAGAGGTTGTGTTTGGAAGTTGAGAGGTTGGGTTTAAGTGCTGTGATTATGGGGAGTAGGGGAGTTGGGAGGATGAGAAGCGGCGAAGGCGACGGGAGGTTAGGGAGTGTTAGTGATTATTGTGTCAGGCATTGTGTTTGTCCTGTTGTCGTTGTGAGGTTTCCTGATGAGAAAGAGGTTGCTCATGAGGGTGGGGCGGTTGTGAAAGTGGCGAAGGGGGGTGATGACGAGGAGGTGGATGAGGATGAGAGTGAGTTTCATGATGCCAGCGATGAGCGGAAATGA 726 50.83 MQQPNKTLESDLPSLATIKVKSSSPRFRSTTTSSTDTPTAGAQRRIGIAVDLSDESAFAVKWAVHQYLRPGDAVILIHVRPTSVLYGADWGSVDLALSDNDPDEQTKEKLENDFDLFTSNKSADIAGPLVEAGIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGVGRMRSGEGDGRLGSVSDYCVRHCVCPVVVVRFPDEKEVAHEGGAVVKVAKGGDDEEVDEDESEFHDASDERK 241
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05750 241 MobiDBLite consensus disorder prediction 21 42 - -
Chla6g05750 241 Pfam Universal stress protein family 44 200 IPR006016 -
Chla6g05750 241 PRINTS Universal stress protein signature 178 200 IPR006015 -
Chla6g05750 241 PRINTS Universal stress protein signature 43 61 IPR006015 -
Chla6g05750 241 MobiDBLite consensus disorder prediction 21 41 - -
Chla6g05750 241 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 44 202 - -
Chla6g05750 241 PANTHER OS01G0783500 PROTEIN 6 241 IPR044162 -
Chla6g05750 241 MobiDBLite consensus disorder prediction 212 241 - -
Chla6g05750 241 CDD USP-Like 45 199 - -
Chla6g05750 241 Gene3D HUPs 32 210 IPR014729 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05750 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr1:128446068 Chla6g05750 Chla-Chr6:228563688 dispersed
Chla Chla-Chr6:11008615 Chla6g05750 Chla-Chr6:228563688 dispersed
Chla Chla-Chr6:11190404 Chla6g05750 Chla-Chr6:228563688 dispersed
Chla Chla-Chr6:228563688 Chla7g03119 Chla-Chr7:137047807 dispersed
Chla Chla-Chr6:228318022 Chla6g05750 Chla-Chr6:228563688 proximal