AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05751 ATGCGACACATCATCGCCGAAGCAAGCAACAACAAAGCGAAGCATAAGCATAAGCATATGCAAAACGCATTCCAAGAAGTGTCAATAGGATTGTACATAAGCCTCAAGAAGCCGTTTGGCTTAGATTTGCAACTACGGGACGGTATAAAAGGTTGCAATCATCACTCGGGAAGACGTTTCTTTCAGTTAAACCCCCAAATCCAAACCCTTAAAACCCTAACCAAATTCAATTTTGGCGGCAAAATTAACTCAAATGTTCACCAAATTCATTCTCCGGCCACCGTCCTTTCCTCCACCCCTCCCCTGCCTCCGCCGTTCACACTCCTCTCAAAACCACGCGCCGCCGTCACGCTCCGCCGCATCTCCGCCGTTTCATTTTCCGTCAACGGAGACGACGAAACGACACCGTACGGACCTTCATTATCCAAAGGCCACAATCCTTCACTTAAACATCAATCATCACAAAAACAAGATAATGATAACGAAGATAGTTCTTTATTAGATGAAAGTTTATTTACTCGTGTTTATGATGTGTCGGCTATTCGAGTGAGTTCGGAACGGTGTTACGCGTTAGAGAGTCAGCTGCGTGGTCATTTATTGAACTGGCCTAGAGTTAGGAACATTGCTAGAGTATCAGGTGATGAAATTGATTTGGGTTGCAAAGTATTTGAAACGAATGATGTCGAGAAGGCGTTAGATAGGAGGATTGACGGAAGAGCGGAGGAGATGTTTAGGAATTTGGCCAAGTTGTCGAGGCCGAAGAGGAAAGGGAAGGGGAAAACCGAGGTGAAGGAAGTTGGGAGAGTAAGAAAGGGTCGGGAAGTGGAGAGGTCGACAAGGTTGTTGCTTTTAGATGAGCGGTATGCGTGTAAAGCGATCGATGAATTGCCTGAGGCGATTAAGGCATGCTTAGCAGGATCACTATTTGAACTTGTGAGATGCAAGCTCACTTTGTTTTACAACTACTGGCAGATGAACGAGGTCTTAGAGGCTTTGCTTCCAAAGGGTATGATTGTTCCTTCGTCCTTTGAGACTGTTGGACATATTATTCATTTAAACTTAAGGGATGAACATCTTCCATATAAGAATGTTATAGCAAAGGTTGTTTTGGACAAAAACAAACCAAAGATACAAACAGTTGTCAATAAGATTGATGCCATCAATAATGACTTTAGAACTATGCAGCTTGAAGTTTTGGCTGGAAATCATTCTCTTGTGACAAGGGTTGTAGAAAATGGACTTCATTTACATGTTGATTTGGCATCAGTGTACTGGAGCTCAAAGCTGGCAACAGAGAGGCAAAGACTTCTAAATTGCTTTACACGGAGTGATGTTGTTTGTGACGTGTTTGCTGGGGTTGGGCCGTTAGCCATATCAGCAGCGAAAAAGGTCAAGCATGTGTATGCAAATGATTTAAATCCTCATGCAGTTGACTATATGGAAAGAAATGCTGTGCTCAACAAATTAGAAAGAAAGATTGAGGTTTTTAACATGGATGGGAGAAGGTTTATTGATGCTATCTTTAAGAGTAAAAGCTCCCGACCCATCACGCAAGTGGTAATGAATCTACCCAAAGATGCAGCTGAATATCTTGATGCATTTAAAGGAGTTTTTAGAGATGCTGACAGGAATGAAGAGTTAACTTTGCCAATGATCCATGTGTATGGTTTCTCAAAAGCTGAAGATCCAGAGTTCGATTTTCACGAGCGGATAAGAATTGCATTGTCGGAGGTGGCATTTGAAGTTAAAATGCATAAAGTACGCCTTGTTGCCCCTGGGAAGTGGATGTTGTGTGCATCATTCGTGCTCCCGGAGAGAGCTGCCCTTGCTAATCCAATCTCGGAACTGTAA 1851 42.95 MRHIIAEASNNKAKHKHKHMQNAFQEVSIGLYISLKKPFGLDLQLRDGIKGCNHHSGRRFFQLNPQIQTLKTLTKFNFGGKINSNVHQIHSPATVLSSTPPLPPPFTLLSKPRAAVTLRRISAVSFSVNGDDETTPYGPSLSKGHNPSLKHQSSQKQDNDNEDSSLLDESLFTRVYDVSAIRVSSERCYALESQLRGHLLNWPRVRNIARVSGDEIDLGCKVFETNDVEKALDRRIDGRAEEMFRNLAKLSRPKRKGKGKTEVKEVGRVRKGREVERSTRLLLLDERYACKAIDELPEAIKACLAGSLFELVRCKLTLFYNYWQMNEVLEALLPKGMIVPSSFETVGHIIHLNLRDEHLPYKNVIAKVVLDKNKPKIQTVVNKIDAINNDFRTMQLEVLAGNHSLVTRVVENGLHLHVDLASVYWSSKLATERQRLLNCFTRSDVVCDVFAGVGPLAISAAKKVKHVYANDLNPHAVDYMERNAVLNKLERKIEVFNMDGRRFIDAIFKSKSSRPITQVVMNLPKDAAEYLDAFKGVFRDADRNEELTLPMIHVYGFSKAEDPEFDFHERIRIALSEVAFEVKMHKVRLVAPGKWMLCASFVLPERAALANPISEL 616
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05751 616 FunFam tRNA (guanine(37)-N1)-methyltransferase 406 603 - -
Chla6g05751 616 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 339 605 IPR029063 -
Chla6g05751 616 ProSiteProfiles SAM-dependent methyltransferase TRM5-TYW2-type domain profile. 343 605 IPR030382 -
Chla6g05751 616 CDD AdoMet-MTases 446 510 - -
Chla6g05751 616 MobiDBLite consensus disorder prediction 132 164 - -
Chla6g05751 616 Gene3D - 324 402 - -
Chla6g05751 616 MobiDBLite consensus disorder prediction 132 154 - -
Chla6g05751 616 PANTHER TRNA METHYLTRANSFERASE 176 606 - GO:0002939(PANTHER)|GO:0005737(PANTHER)|GO:0008175(PANTHER)|GO:0009019(PANTHER)|GO:0030488(PANTHER)
Chla6g05751 616 Pfam Met-10+ like-protein 342 540 IPR030382 -
Chla6g05751 616 Hamap tRNA (guanine(37)-N1)-methyltransferase [TRMT5]. 164 605 IPR025792 GO:0030488(InterPro)|GO:0052906(InterPro)
Chla6g05751 616 Gene3D Vaccinia Virus protein VP39 406 603 IPR029063 -
Chla6g05751 616 FunFam tRNA (guanine(37)-N1)-methyltransferase 325 403 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05751 K15429 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr6:228588766 Chla7g00555 Chla-Chr7:18656144 dispersed
Chla Chla-Chr6:228373827 Chla6g05751 Chla-Chr6:228588766 proximal