AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chla6g05783 | ATGGGTGATCAAAAGAATTTAGCAAATATTGATGACTTGCCTTTACATTTGATTCTTGAAATCTTGACATGTGGGTTGGGTGGTGTGGATCTTGTGTGTTTGGAGTTAAGTTGTAAGCTTTTTAGAGATGGGTATGAGTTGGTTCCTGTCAATTTTAAGTCTTTAGGTGAGTTTGCGGCTTTTCGCCTTTGCGGGTCGAATTCAGTTTTTGTTGGTTTGAGTGATGGAGCTAAGGATGAGCTTTTGGCTAGGTGTGGTGGGTGTTGGAAGAGGGTTTTGAGGTTCTTGCAGTCGGTTAACGAGTCTTCGGATGTTGTGCAAACGTATTCGGGCAATATGCAAATTAGGAGTGGAAGGTATCATACATTACTGATCAAGGATTCAAAGGTTTACTCTTGTGGTTCAAGTTTGTGTGGTGTTCTTGGACATGGTCCTGAAACCACGCAATGTGCTGCATTTACTCGGATTAAGTTCCGTATCATGTCAATGTTACACACGCTTCCGCCTCCCATAATCATGCTGCCTTTGTCACGCAGTCAGGAGAGGTATGTGTTCACTTGTGGTGACAATTCGTCTTTCTGTTGTGGGCATAGTGATACAAACCGTCCAATATTTAAGCCTCGCCTTGTTGAAGCCTTAAAGGAAGTTTCTTGCAAGCAGGTTGCTACTGGTGTTAGCTTTACTATGTTTCTCACAACCAATGGCCAAGTATACACATGTGGGATCAACACACAAGGTCAACTAGGCCATGGTGACACCTTAGATAGACCAATACCGAAACTTGTAGAAGGGCTTGCGACTGTTGGTCCTGTTGTACAGATTACTGCTGGTCCAAGCTATGCACTTGCTGTCACAAGCGATGGATCAGTTTATTCATTTGGTTCTGGAACCAATTTCTGTCTCGGTCATGGCGAGCAGCACAGTGAACTCAGCCCTCGGCCACTTCAATGGTTTAGGAGAAAAGGCATACATGTGGTTCGTGTGTCTGCTGGTGACGAGCATGTTGTTGCACTCGATTCTAATGGATACGTTTACACATGGGGCAAAGGTTATTGTGGTGCACTTGGTCATGGTGATGAGATTGATAAAACGACTCCCGAGCTCTTAACCAGCCTTAAAACGCACCTCGCTGTTCAGGTGTCTTTGTTTGTAGGTGTGCAAAGCAAGAGAAAGACATTTGTGTTAGTCGATAATGGATGTTTATATGGATTTGGATGGATGGGTTTCGGGAGCTTGGGGTTCCCAGATAGAGGTGTATCCGATAAAGTATTGAAGCCTAGCAGACTTTACAGTCTAAAGGATCATCATATTTCACAAGTGAGCACAGGTTTGTATCACTCGGTTGTACTCACTAATCGTGGCCGGATATTTGGATTTGGAGACAATGAACGAGGACAACTGGGTCATGATAAGTTAAGAGATTGTCGCAGTGCCACTGAAATATTGGTTGAAGAGACAAGTGGACGTGGTGCATTTCGTCTATGTTGA | 1488 | 43.95 | MGDQKNLANIDDLPLHLILEILTCGLGGVDLVCLELSCKLFRDGYELVPVNFKSLGEFAAFRLCGSNSVFVGLSDGAKDELLARCGGCWKRVLRFLQSVNESSDVVQTYSGNMQIRSGRYHTLLIKDSKVYSCGSSLCGVLGHGPETTQCAAFTRIKFRIMSMLHTLPPPIIMLPLSRSQERYVFTCGDNSSFCCGHSDTNRPIFKPRLVEALKEVSCKQVATGVSFTMFLTTNGQVYTCGINTQGQLGHGDTLDRPIPKLVEGLATVGPVVQITAGPSYALAVTSDGSVYSFGSGTNFCLGHGEQHSELSPRPLQWFRRKGIHVVRVSAGDEHVVALDSNGYVYTWGKGYCGALGHGDEIDKTTPELLTSLKTHLAVQVSLFVGVQSKRKTFVLVDNGCLYGFGWMGFGSLGFPDRGVSDKVLKPSRLYSLKDHHISQVSTGLYHSVVLTNRGRIFGFGDNERGQLGHDKLRDCRSATEILVEETSGRGAFRLC | 495 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chla6g05783 | 495 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 113 | 318 | IPR051210 | - | |
| Chla6g05783 | 495 | Gene3D | - | 92 | 319 | IPR009091 | - | |
| Chla6g05783 | 495 | SUPERFAMILY | RCC1-BLIP-II | 109 | 212 | IPR009091 | - | |
| Chla6g05783 | 495 | PRINTS | Chromosome condensation regulator RCC1 signature | 289 | 305 | IPR000408 | - | |
| Chla6g05783 | 495 | PRINTS | Chromosome condensation regulator RCC1 signature | 325 | 338 | IPR000408 | - | |
| Chla6g05783 | 495 | PRINTS | Chromosome condensation regulator RCC1 signature | 344 | 360 | IPR000408 | - | |
| Chla6g05783 | 495 | PRINTS | Chromosome condensation regulator RCC1 signature | 456 | 470 | IPR000408 | - | |
| Chla6g05783 | 495 | PRINTS | Chromosome condensation regulator RCC1 signature | 440 | 456 | IPR000408 | - | |
| Chla6g05783 | 495 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 184 | 231 | IPR000408 | - | |
| Chla6g05783 | 495 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 287 | 338 | IPR000408 | - | |
| Chla6g05783 | 495 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 234 | 284 | IPR000408 | - | |
| Chla6g05783 | 495 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 341 | 381 | IPR000408 | - | |
| Chla6g05783 | 495 | SUPERFAMILY | RCC1-BLIP-II | 182 | 483 | IPR009091 | - | |
| Chla6g05783 | 495 | Gene3D | - | 320 | 491 | IPR009091 | - | |
| Chla6g05783 | 495 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 288 | 341 | IPR000408 | - | |
| Chla6g05783 | 495 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 235 | 287 | IPR000408 | - | |
| Chla6g05783 | 495 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 440 | 450 | IPR000408 | - | |
| Chla6g05783 | 495 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 399 | 453 | IPR000408 | - | |
| Chla6g05783 | 495 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 437 | 466 | - | - | |
| Chla6g05783 | 495 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 342 | 398 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chla6g05783 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chla | Chla-Chr6:230408136 | Chla7g04743 | Chla-Chr7:217060779 | dispersed | |
| Chla | Chla-Chr7:190493221 | Chla6g05783 | Chla-Chr6:230408136 | transposed | |
| Chla | Chla-Chr8:103125370 | Chla6g05783 | Chla-Chr6:230408136 | transposed | |
| Chla | Chla-Chr9:8568979 | Chla6g05783 | Chla-Chr6:230408136 | transposed | |
| Chla | Chla-Chr6:230408136 | Chla6g05986 | Chla-Chr6:241179625 | wgd |