AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05797 ATGAGAGGAATTATTGGTAAATTTCCATCAAGTGATGGAAATGGTGAAGTTGGTAGTGCTAATGGGATCATAAAACACAACAGAAAATGCAAAGATGTTGTGTTTCTTGTCTTTTTTATTGCTTTTTGGGTTGCTATGATTGTTAACTCAAGTTTTGGGTTTAACCAAGGAAACCCTTTAAGGCTAAACTTCGGGTTGGATTATAAAGGAAACGTATGTGGAGGCAAACACAAAGATTTTAACCTGCAAGAATTGGAACTCAAATACTATGTTAATCCTAACCAAGTTTACCAAAGTGGATCAAAGAATAGTGGATTCAAACTGTCTAATGCCCGAACAATATGTTTGTTAGATTGTCCCATACCATCAGAAGATTCTCTAAATTGGGTTTGTGATTATCCAGAGGGTGATATTCGTCTTTCATTAGATGATTGGATCGATATGAATTATGATTATTTTGCTGACCTTACTCCTGAGTTAAGAAACACTTCTCTTCAACTTCAAGGTCCTTGTTACCCTGTCATTTTTCCAAGCGTAAACGTTTACTGGACTTGCCAGTTTATTGATCGCCCATCGAACGTGTCCTTAACACATTGGAAGCAAATGAATGGTGTTACCATCAATGATGACATGGTCATAGATAAATCTATTCATAAAGCCATCAACGCCCGGTCTTCAGTTTTAAAGAGATATGTGGCTGATGTTGGAAAATCATGGCCAGTGCTGCTTGTATGCGGTGGATTCTTGCCTCTATTTCTGTCGTTGCTATGGCTTTTAATGATTCGACATTTTGTTGCTGGAATGCCATGGGTTACCGTATTTTTCTTTAATGGTCTCATAATATCAGTCACAATGTTCTACTACATGAAAGCTGGATGGATTGGAGACGACGCTATCTCGCCCATCATTGGTGAACATGATCCATACTATCATGTTTCTGCGAGGGAGCAACATCATATCCATGCTGCTGCTTTTTTCATGACATGTGTGATGATTGTTGCTGTTTTATCATCCATAGCTATTGTAAGGCGGATCCTCATGGCAACTTCAGTACTTAAGGTTGCAGCAAAGGTCATTGGAGAAGTTCATGCTCTCATAATATTTCCAGTCATACCATACCTAATCCTTGCGGTTTTTTACATGTTTTGGTTGTCAGCTGCCCTCCATCTTTTCAGTTCAGGTCAAATAGTCCGCAATGATTGCAGTACAAATTGCTGTGCTTATGATCTTAAAGCTAAAAGGGTTAGCTGTGATGATTGTTGTGGCTATAGCATCCAGTACACCCCTCATATAGCAGCTTCAATTTTATTCCACTTATTCGGGTGCTACTGGGCTACACAGTTTATCATAGCATGCTCTTCAACCGTGATTGCCGGTTCTGTAGCTTCCTACTATTGGGCTCGTGGGGAATCTTCGACAACGATTCCATTTCTTCCAGTTTTCTCGTCAATGAAGCTACTCATGCGGTACAGCCTTGGATCAGTGGCAATTGGGTCCTTGATTGTATCGTTTGTTGAGTCAACTCGCTTCATACTCGAGGCCATACGTCGCAGATTAAAAGTTGCTGACATCATGCCCGAAAGCTGGATTAAGAGGATGATGTTCCATACTTCTCGGTTCTGCTTAAAGGGTATTGAATTGACCATTAAATCTGTAAATCGAAACGCATACATTATGATTGCTATAACCGGAAAAGGGTTTTTTAGAGCTTCTGAGATGGCAACAGATTTGATAATTAGTAACATTCTACGTATAGGCAAAGTGAATGTCATCGGGGATGTTATTCTCTTTCTTGGCAAGTTGTGTGTCAGTCTTGCAAGTGCACTTTTCGCGTTTCTTATGTTGGATACTCACAAATACAAATCATCCCATAACAAGATTACATCCCCGTTATTTCCCGTGCTAGTGTGTTGGGGTCTAGGATATATAGTGGCTACCCTCTTCTTTGCAGTGGTGGAAATGTCGATTGATACCATTATCCTTTCATATTGCCAAGATGCAGAGGAGCATCAAGGAACCGCACATTATGCTCCTCCACTTTTAATTGAAACATTTGATGATCAAAATGAGGTGCAAAGAATTGGACAATGA 2091 39.84 MRGIIGKFPSSDGNGEVGSANGIIKHNRKCKDVVFLVFFIAFWVAMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHKDFNLQELELKYYVNPNQVYQSGSKNSGFKLSNARTICLLDCPIPSEDSLNWVCDYPEGDIRLSLDDWIDMNYDYFADLTPELRNTSLQLQGPCYPVIFPSVNVYWTCQFIDRPSNVSLTHWKQMNGVTINDDMVIDKSIHKAINARSSVLKRYVADVGKSWPVLLVCGGFLPLFLSLLWLLMIRHFVAGMPWVTVFFFNGLIISVTMFYYMKAGWIGDDAISPIIGEHDPYYHVSAREQHHIHAAAFFMTCVMIVAVLSSIAIVRRILMATSVLKVAAKVIGEVHALIIFPVIPYLILAVFYMFWLSAALHLFSSGQIVRNDCSTNCCAYDLKAKRVSCDDCCGYSIQYTPHIAASILFHLFGCYWATQFIIACSSTVIAGSVASYYWARGESSTTIPFLPVFSSMKLLMRYSLGSVAIGSLIVSFVESTRFILEAIRRRLKVADIMPESWIKRMMFHTSRFCLKGIELTIKSVNRNAYIMIAITGKGFFRASEMATDLIISNILRIGKVNVIGDVILFLGKLCVSLASALFAFLMLDTHKYKSSHNKITSPLFPVLVCWGLGYIVATLFFAVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFDDQNEVQRIGQ 696
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05797 696 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 21 686 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Chla6g05797 696 Pfam Plasma-membrane choline transporter 326 668 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05797 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr4:248496302 Chla6g05797 Chla-Chr6:230791012 dispersed
Chla Chla-Chr5:162413452 Chla6g05797 Chla-Chr6:230791012 dispersed
Chla Chla-Chr6:15548140 Chla6g05797 Chla-Chr6:230791012 dispersed
Chla Chla-Chr6:230791012 Chla7g05564 Chla-Chr7:248250705 dispersed