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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05804 ATGTCATGCAGTTTGTACCTTGTTTTTGAGTACATGGAACATGATCTAGCCGGACTAGCTTCACACCCTAGTCTTAAGTTCACAGAATCACAGGTTAAATGCTATATACGGCAACTCTTAAATGGACTTGATCATTGTCACAGTCATGGTATTCTTCATCGTGACATAAAAGGTTCAAACCTTTTAGTCGATAATAATGGAATTTTAAAGATAGCAGATTTTGGACTAGCAAGTTTTTTTGACCCTCAACAAAGTCAACCATTGACCAGTCGTGTAGTGACTTTGTGGTATAGACCGCCTGAACTTTTACTCGGTGCTACTTATTATGGCACTGCTGTTGATTTATGGAGTACTGGTTGCATAGTTGCTGAGTTATATGCTGGCAAGCCTATAATGCCCGGTAGAACAGAGGTGGAACAGTTGCACAAAATTTTCAAGCTTTGTGGTTCTCCATCTGAAGATTATTGGAGAAAATCGAAATTGCCTCACGCCACCATTTTTAAGCCTCAACAACCATACAAACGGGTAGTTGCAGATACATTCAAGGAATTTCCTGCACCTGCATTAGCTCTTATGGAGACTCTTCTTTCTATAGATCCTGCTGATCGTGGGTCAGCAGCTTCGGCCTTGAAGAGTGAGTTTTTTACTACAAAACCGTTCCCTTGTGATCCTTCAAGCTTGCCCAAGTATCCTCCCAGTAAGGAGTTTGATGCTAAATTACGGGATGAAGAAGCTCGGAGACAAGCTACTGCTGGAGGTAAGGTTCACCGACCTAATCCTGAAAGAAAAGCCACAAGGGAGTCTCGAGCCGTTCCTGCACCCGAAGCTAATGCTGAACTCGCATCCTCTTTGCATAAAAGACAAGGTCAATCCTACTCCCGTAGTGAAAAATTCAACCCTCAACAGGAAGAATCGGCTTCAGGGTTTCCAATTGATCCACCAAGACCTTCTCAAGCTATGGAGCACGATCAAGCCAACAATCTTCACAAAAGAGCTTCACATTCTGGACCATTGGTTCAACGCGCCGCCTGGACAAAAGCTGGAAAAAAGACCGAGTCCAACGGTCCTGATATGTCTGGTTTAGTAGCTGCAAGAAAAAGTATGCTATACGAAGATCGAAGGGACAAAACTGGAACTTCACAACAACTTCCAAGACTTATTAGCCGGTTCCCAGGATCGTTTAAAGAGGCATCTTCAAATGGAGGTGGACAACGTGACGAAGATGGAAGGACAAGCAATAAAGATCCAGTTTCCCTCGGATATGGGTCGAAGGCAAGTAAGATTCACTATTCAGGCCCACTACAAGCTCCATCCGGGAAAATGGATCAAATGTTGAAAGACCATGATCGACAAGTTCAAGAAGCAGTAAGACGCAGCATGCGAGATAAAACCAAAGTGAGAAAAGTTCAAGCTGAGAATTCATTCTTTTCTGGTCGGTGA 1440 43.4 MSCSLYLVFEYMEHDLAGLASHPSLKFTESQVKCYIRQLLNGLDHCHSHGILHRDIKGSNLLVDNNGILKIADFGLASFFDPQQSQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCIVAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYKRVVADTFKEFPAPALALMETLLSIDPADRGSAASALKSEFFTTKPFPCDPSSLPKYPPSKEFDAKLRDEEARRQATAGGKVHRPNPERKATRESRAVPAPEANAELASSLHKRQGQSYSRSEKFNPQQEESASGFPIDPPRPSQAMEHDQANNLHKRASHSGPLVQRAAWTKAGKKTESNGPDMSGLVAARKSMLYEDRRDKTGTSQQLPRLISRFPGSFKEASSNGGGQRDEDGRTSNKDPVSLGYGSKASKIHYSGPLQAPSGKMDQMLKDHDRQVQEAVRRSMRDKTKVRKVQAENSFFSGR 479
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05804 479 MobiDBLite consensus disorder prediction 283 306 - -
Chla6g05804 479 ProSitePatterns Serine-Threonine protein kinases active-site signature. 51 63 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Chla6g05804 479 MobiDBLite consensus disorder prediction 380 400 - -
Chla6g05804 479 ProSiteProfiles Protein kinase domain profile. 1 215 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Chla6g05804 479 MobiDBLite consensus disorder prediction 442 469 - -
Chla6g05804 479 SUPERFAMILY Protein kinase-like (PK-like) 4 223 IPR011009 -
Chla6g05804 479 Pfam Protein kinase domain 4 215 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Chla6g05804 479 MobiDBLite consensus disorder prediction 370 479 - -
Chla6g05804 479 MobiDBLite consensus disorder prediction 221 324 - -
Chla6g05804 479 FunFam probable serine-threonine-protein kinase At1g54610 14 255 - -
Chla6g05804 479 Gene3D Transferase(Phosphotransferase) domain 1 14 254 - -
Chla6g05804 479 MobiDBLite consensus disorder prediction 234 269 - -
Chla6g05804 479 SMART serkin-6 4 215 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Chla6g05804 479 PANTHER CELL DIVISION PROTEIN KINASE 5 215 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05804 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr6:230933650 Chla9g04863 Chla-Chr9:193315165 dispersed
Chla Chla-Chr9:202892303 Chla6g05804 Chla-Chr6:230933650 dispersed
Chla Chla-Chr6:230933650 Chla6g05977 Chla-Chr6:240801392 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chla2g05917 . 18 364 Core Cell Cycle gene family AT5G10270 48.718 1.07e-104 326.0
Chla7g03625 . 137 222 Core Cell Cycle gene family AT5G48820 45.349 2.33e-18 76.3
Chla3g06680 . 18 363 Core Cell Cycle gene family AT5G10270 48.415 1.94e-105 323.0
Chla4g05348 . 209 361 Core Cell Cycle gene family AT5G11300 33.974 1.51e-20 92.8
Chla6g05977 . 18 376 Core Cell Cycle gene family AT5G10270 45.833 9.21e-96 301.0
Chla7g03710 ACH 62 365 Core Cell Cycle gene family AT5G67260 46.835 2.87e-92 278.0
Chla8g06421 . 1 430 Core Cell Cycle gene family AT1G76310 49.777 7.07e-130 379.0
Chla6g06972 ACH 47 348 Core Cell Cycle gene family AT5G67260 49.387 4.13e-94 283.0
Chla8g02309 ACH 5 304 Core Cell Cycle gene family AT1G76540 30.312 7.12e-41 145.0
Chla7g01417 . 79 190 Core Cell Cycle gene family AT1G70210 28.947 6.10e-07 49.3
Chla6g02606 . 18 497 Core Cell Cycle gene family AT1G02970 54.878 3.94e-180 512.0
Chla5g02435 . 197 429 Core Cell Cycle gene family AT1G76310 24.125 4.44e-06 47.8
Chla8g02326 . 116 301 Core Cell Cycle gene family AT1G20930 31.841 1.09e-29 112.0
Chla2g02273 . 4 237 Core Cell Cycle gene family AT5G02110 31.381 3.36e-29 113.0
Chla9g03242 . 17 163 Core Cell Cycle gene family AT5G64960 31.293 4.60e-12 64.7
Chla2g01624 . 17 270 Core Cell Cycle gene family AT5G10270 32.422 1.79e-23 100.0
Chla2g06236 . 8 363 Core Cell Cycle gene family AT1G47230 53.652 3.31e-138 395.0
Chla6g01920 . 2 312 Core Cell Cycle gene family AT1G76540 29.231 1.97e-46 160.0
Chla9g01926 . 144 827 Core Cell Cycle gene family AT3G12280 58.54 0.0 761.0
Chla2g05864 . 4 280 Core Cell Cycle gene family AT5G02110 29.066 1.17e-32 122.0
Chla1g02369 ACH 9 282 Core Cell Cycle gene family AT4G34160 51.536 5.57e-98 294.0
Chla1g06155 . 8 478 Core Cell Cycle gene family AT4G28980 51.055 1.19e-159 458.0
Chla3g02003 . 170 290 Core Cell Cycle gene family AT3G11520 48.0 1.35e-30 112.0
Chla5g02265 . 18 364 Core Cell Cycle gene family AT5G10270 46.418 2.11e-105 327.0
Chla8g06601 . 152 386 Core Cell Cycle gene family AT1G20610 52.766 1.25e-78 240.0
Chla5g03430 . 6 315 Core Cell Cycle gene family AT1G20930 73.548 3.65e-168 467.0
Chla3g02029 . 25 294 Core Cell Cycle gene family AT3G48750 54.296 1.63e-100 295.0
Chla6g06827 . 150 195 Core Cell Cycle gene family AT1G49620 63.043 8.96e-19 75.5
Chla3g01811 . 14 304 Core Cell Cycle gene family AT1G76540 25.806 3.69e-28 111.0
Chla8g03311 . 80 192 Core Cell Cycle gene family AT1G47210 61.062 2.95e-47 148.0
Chla8g06351 . 17 80 Core Cell Cycle gene family AT5G64960 56.25 1.75e-16 78.2
Chla2g02536 . 18 345 Core Cell Cycle gene family AT5G10270 48.116 1.70e-98 310.0
Chla9g01802 . 1 287 Core Cell Cycle gene family AT3G48750 33.562 2.51e-50 170.0
Chla6g05754 . 1 255 Core Cell Cycle gene family AT4G03270 28.571 2.34e-19 84.7
Chla2g06665 . 18 367 Core Cell Cycle gene family AT5G10270 44.29 4.77e-98 306.0
Chla3g02001 . 317 422 Core Cell Cycle gene family AT4G37490 40.541 6.52e-15 68.6
Chla5g01393 . 125 169 Core Cell Cycle gene family AT2G22490 62.222 1.88e-13 65.1
Chla9g04921 . 1 504 Core Cell Cycle gene family AT5G10270 74.125 0.0 725.0
Chla6g02565 . 18 497 Core Cell Cycle gene family AT1G02970 54.675 3.04e-179 510.0
Chla2g00408 . 68 128 Core Cell Cycle gene family AT3G48750 39.344 9.02e-06 42.4
Chla7g06172 . 68 454 Core Cell Cycle gene family AT1G80370 45.823 1.63e-97 296.0
Chla8g06596 . 157 240 Core Cell Cycle gene family AT1G76310 69.048 7.25e-35 121.0
Chla6g03138 . 1 222 Core Cell Cycle gene family AT5G48820 42.478 9.88e-44 144.0
Chla5g00878 . 32 353 Core Cell Cycle gene family AT5G43080 57.099 6.74e-127 369.0
Chla9g02012 . 31 982 Core Cell Cycle gene family AT3G12280 67.495 0.0 1290.0
Chla1g02457 . 82 193 Core Cell Cycle gene family AT1G70210 44.167 3.68e-22 91.7
Chla4g00571 . 12 339 Core Cell Cycle gene family AT1G70210 53.869 4.07e-114 331.0
Chla9g04863 . 18 367 Core Cell Cycle gene family AT5G10270 50.997 9.98e-115 353.0
Chla26913g00006 . 60 294 Core Cell Cycle gene family AT3G48750 31.646 6.70e-35 125.0
Chla6g04355 . 2 83 Core Cell Cycle gene family AT2G27970 70.732 1.47e-33 108.0
Chla9g02371 . 18 436 Core Cell Cycle gene family AT5G10270 44.7 8.91e-119 362.0
Chla5g00218 . 9 301 Core Cell Cycle gene family AT5G65420 44.514 2.74e-77 237.0
Chla1g03317 . 181 212 Core Cell Cycle gene family AT1G76540 59.375 1.88e-07 47.0
Chla7g05398 . 5 310 Core Cell Cycle gene family AT1G20930 41.956 3.50e-79 248.0
Chla8g02301 . 43 323 Core Cell Cycle gene family AT4G37630 35.473 2.97e-51 170.0
Chla9g04257 ACH 62 365 Core Cell Cycle gene family AT5G67260 47.799 2.35e-90 274.0
Chla6g04195 . 1 317 Core Cell Cycle gene family AT5G27620 58.991 1.50e-135 386.0
Chla2g02513 . 20 312 Core Cell Cycle gene family AT1G76540 34.237 9.55e-55 182.0
Chla8g02290 . 43 323 Core Cell Cycle gene family AT4G37630 35.135 2.82e-50 167.0
Chla7g02566 . 10 301 Core Cell Cycle gene family AT5G65420 31.229 9.19e-25 99.0
Chla7g03327 . 18 387 Core Cell Cycle gene family AT5G10270 39.189 5.09e-82 260.0
Chla7g04499 ACH 1 326 Core Cell Cycle gene family AT5G43080 57.101 5.35e-133 382.0
Chla2g05426 . 3 301 Core Cell Cycle gene family AT3G54180 28.818 2.05e-29 114.0
Chla7g06176 . 68 459 Core Cell Cycle gene family AT1G80370 48.469 3.31e-109 327.0
Chla1g02314 . 95 195 Core Cell Cycle gene family AT1G49620 48.113 8.24e-25 93.2
Chla9g02397 . 18 364 Core Cell Cycle gene family AT5G10270 47.839 7.84e-107 331.0
Chla8g06600 . 192 284 Core Cell Cycle gene family AT1G20610 54.839 3.11e-29 106.0
Chla7g05575 . 18 357 Core Cell Cycle gene family AT5G10270 52.786 1.38e-115 351.0
Chla8g05404 . 1 213 Core Cell Cycle gene family AT5G48820 40.455 6.05e-31 110.0
Chla9g01924 . 20 982 Core Cell Cycle gene family AT3G12280 67.302 0.0 1334.0
Chla7g00719 . 1 505 Core Cell Cycle gene family AT5G10270 74.175 0.0 737.0
Chla8g06603 . 154 386 Core Cell Cycle gene family AT1G20610 46.352 6.39e-65 205.0
Chla2g01560 . 17 145 Core Cell Cycle gene family AT5G64960 38.76 8.85e-23 93.2
Chla6g05636 . 21 592 Core Cell Cycle gene family AT1G16330 42.244 8.99e-131 396.0
Chla7g04800 . 19 304 Core Cell Cycle gene family AT1G76540 25.223 2.48e-26 106.0
Chla3g02002 . 317 422 Core Cell Cycle gene family AT4G37490 40.566 1.90e-16 71.6
Chla6g02832 . 215 285 Core Cell Cycle gene family AT3G48750 35.366 8.33e-07 46.6
Chla3g01277 . 18 80 Core Cell Cycle gene family AT2G27970 87.692 2.26e-38 122.0
Chla2g00410 . 4 294 Core Cell Cycle gene family AT3G48750 64.646 3.75e-137 388.0
Chla7g02753 . 72 366 Core Cell Cycle gene family AT5G10270 43.813 2.27e-77 247.0
Chla9g01499 . 12 433 Core Cell Cycle gene family AT5G11300 48.602 3.37e-135 394.0
Chla4g06274 . 6 391 Core Cell Cycle gene family AT1G18040 77.003 0.0 599.0
Chla8g06598 . 157 398 Core Cell Cycle gene family AT1G76310 51.653 2.83e-76 236.0
Chla3g04498 . 2 155 Core Cell Cycle gene family AT4G28980 30.0 1.23e-12 69.7
Chla1g06147 . 8 167 Core Cell Cycle gene family AT4G28980 59.375 2.62e-61 195.0
Chla2g00402 ACH 44 105 Core Cell Cycle gene family AT3G48750 54.545 6.93e-17 74.7
Chla2g05547 . 238 309 Core Cell Cycle gene family AT3G54180 76.389 9.91e-39 129.0
Chla1g02360 ACH 9 282 Core Cell Cycle gene family AT4G34160 50.704 4.13e-95 286.0
Chla4g03569 . 76 331 Core Cell Cycle gene family AT2G22490 45.896 7.98e-65 207.0
Chla5g03919 . 8 302 Core Cell Cycle gene family AT3G54180 27.059 2.23e-13 69.3
Chla1g03301 . 1 294 Core Cell Cycle gene family AT3G48750 37.71 1.42e-65 206.0
Chla3g04045 . 283 339 Core Cell Cycle gene family AT2G26760 70.175 2.32e-24 91.7
Chla9g04111 . 18 366 Core Cell Cycle gene family AT5G10270 47.278 6.10e-111 340.0
Chla4g00011 . 17 80 Core Cell Cycle gene family AT5G64960 57.812 6.96e-16 75.1
Chla9g04919 . 304 479 Core Cell Cycle gene family AT5G10270 55.914 8.63e-41 144.0
Chla2g06240 . 1 353 Core Cell Cycle gene family AT5G43080 48.895 1.33e-109 324.0
Chla1g04650 . 18 325 Core Cell Cycle gene family AT5G10270 37.864 2.78e-56 198.0
Chla6g05804 . 113 361 Core Cell Cycle gene family AT5G10270 56.627 9.35e-97 299.0
Chla3g00932 . 181 236 Core Cell Cycle gene family AT1G47230 62.5 5.62e-18 78.2
Chla9g02013 . 306 450 Core Cell Cycle gene family AT3G12280 43.448 1.23e-25 98.6
Chla1g02406 . 3 332 Core Cell Cycle gene family AT5G43080 47.917 3.70e-101 301.0
Chla9g01928 . 135 865 Core Cell Cycle gene family AT3G12280 57.572 0.0 784.0
Chla2g00400 . 334 436 Core Cell Cycle gene family AT5G06150 41.905 8.46e-20 82.0
Chla8g05406 . 1 220 Core Cell Cycle gene family AT5G48820 37.778 1.76e-31 111.0
Chla2g06225 ACH 1 353 Core Cell Cycle gene family AT5G43080 56.354 3.69e-143 407.0
Chla5g01933 . 18 357 Core Cell Cycle gene family AT5G10270 51.613 7.95e-116 351.0
Chla7g06173 . 48 459 Core Cell Cycle gene family AT1G80370 45.902 2.76e-111 333.0
Chla9g04107 . 18 366 Core Cell Cycle gene family AT5G10270 43.305 3.61e-92 291.0
Chla5g00548 . 21 363 Core Cell Cycle gene family AT5G10270 45.404 2.14e-100 312.0
Chla4g00519 . 12 339 Core Cell Cycle gene family AT1G70210 51.775 1.43e-100 297.0
Chla7g04473 . 18 286 Core Cell Cycle gene family AT4G34160 47.018 1.11e-79 246.0
Chla7g03739 ACH 12 304 Core Cell Cycle gene family AT1G76540 31.31 2.63e-42 149.0
Chla5g06365 . 1 80 Core Cell Cycle gene family AT2G27970 90.244 7.86e-52 155.0
Chla1g03284 . 1 287 Core Cell Cycle gene family AT3G48750 38.276 6.60e-65 205.0
Chla5g03217 . 2 309 Core Cell Cycle gene family AT3G54180 77.922 1.75e-179 495.0
Chla5g07467 . 1 204 Core Cell Cycle gene family AT5G48820 38.028 7.11e-30 107.0
Chla1g03967 . 98 239 Core Cell Cycle gene family AT5G27620 28.477 1.45e-10 57.8
Chla3g03402 . 11 294 Core Cell Cycle gene family AT3G48750 56.401 2.59e-110 319.0
Chla8g02441 . 86 191 Core Cell Cycle gene family AT1G49620 37.383 1.88e-13 67.4
Chla4g04743 . 1 294 Core Cell Cycle gene family AT3G48750 85.714 0.0 535.0
Chla5g00877 . 1 332 Core Cell Cycle gene family AT5G43080 55.685 1.87e-126 365.0
Chla3g02005 . 170 410 Core Cell Cycle gene family AT3G11520 41.935 7.17e-49 164.0
Chla3g04050 . 11 377 Core Cell Cycle gene family AT2G26760 54.897 3.56e-147 423.0
Chla4g06276 . 117 290 Core Cell Cycle gene family AT1G18040 62.687 1.35e-73 227.0
Chla8g02688 . 18 357 Core Cell Cycle gene family AT5G10270 45.588 3.51e-99 309.0
Chla5g00932 . 146 438 Core Cell Cycle gene family AT5G06150 50.164 1.43e-90 278.0
Chla9g05104 . 18 470 Core Cell Cycle gene family AT5G63610 76.824 0.0 711.0
Chla2g05459 . 6 424 Core Cell Cycle gene family AT5G25380 45.923 1.98e-126 372.0
Chla1g00750 . 1 294 Core Cell Cycle gene family AT3G48750 31.525 1.95e-45 154.0
Chla5g02779 . 5 459 Core Cell Cycle gene family AT1G44110 57.143 0.0 520.0
Chla6g06948 ACH 18 348 Core Cell Cycle gene family AT5G67260 47.339 4.64e-94 283.0
Chla8g06595 . 157 284 Core Cell Cycle gene family AT1G76310 60.938 6.62e-48 157.0
Chla9g01409 . 18 363 Core Cell Cycle gene family AT5G10270 50.72 6.12e-119 360.0
Chla9g01666 . 17 372 Core Cell Cycle gene family AT5G10270 44.78 1.21e-94 299.0
Chla6g03204 ACH 98 239 Core Cell Cycle gene family AT5G27620 29.139 4.79e-12 65.5
Chla2g00500 . 143 246 Core Cell Cycle gene family AT2G26760 33.333 3.96e-14 66.6
Chla5g04469 . 17 371 Core Cell Cycle gene family AT5G64960 44.231 1.42e-94 301.0
Chla8g04201 . 36 429 Core Cell Cycle gene family AT1G20610 54.822 3.02e-145 417.0
Chla5g03428 . 11 315 Core Cell Cycle gene family AT1G20930 85.246 0.0 551.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Chla Pkinase 1.4e-47 CL0016 PK CMGC_CDK-CRK7-CDK9