AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05861 ATGACATCTCGCATCATCCTCCGTACACTCAAATCCAACCTCTTCCGTCTCCGTCCACTCACATCCATCGCCGCCGTTAACCTCCGTCAAACCGCCGTATCGGCGAACAATGTTCGTGAATACTCGACACGTCAGACGACGTCATCGTTGAACGACCCAAACCCTAACTGGTCAAACAGGCCGCCAAAAGAGACGATATTGTTAGATGGATGTGATTTTGAACATTGGCTTGTGGTTGTTGAGAAACCTGAAGGAGAGCCTACTAGAGATGAGATTATTGAGAATTATATTAATACTTTGGCTAAAGTTGTTGGAAGTTATGATGAAGCAAGGATGAAGATCTACTCGGTTTCAACAAGATGCTATTATGCTTTTGGAGCTCTTGTATCTGAAGAAGATTCTTACAAGCTTAAGGAATTACCTGGAGTTCGTTGGGTGCTCCCTGATTCTTATTTGGATGTTAAAAACAAGGATTACGGAGGTGAACCATTTATTGATGGAAAGGCTGTTCCATATGACCCAAAGTACCATGAAGAGTGGATCAGGAACAATGCTCGTGCCAATGAAAGAAACAGAAGGAATGACAGGCCTCGCAACTTTGACAGATCAAGAAATTTTGAGAGAAGAAGAGAGAACATTGGTCCGCCATCCAACATGGGAGGACCTCCACCCAACATGGGAGGACAACCACCTAACATGGGAGGAAGACCACAAGGTGGTAATATGGGTGGTCCGCCACCCAACAACTGGAATAATGGGCCACCACAACATTATGGCGGTGGGCCGCCACATATGGGAGGCGGGATGCCGCCTCAAAACAACATGGGCGGAGGAATGAGGCCTCAGAACATGGCTGGAGGGATGCCTAATAGTGCTCCTCCTAACTACCAGCAGCAGGGTCAGTATGGGTCAAATAATGGAGGAATGCCATATCAATCTGGTCCTGGGCCCAACAGTTACCCTCCCAATGTAGGTGGTGGAAATCCCTACCAGAATCAGAATGTTCCTGGAAGAGACATGCCCACATCCAACTATGAATGA 1041 46.97 MTSRIILRTLKSNLFRLRPLTSIAAVNLRQTAVSANNVREYSTRQTTSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEKPEGEPTRDEIIENYINTLAKVVGSYDEARMKIYSVSTRCYYAFGALVSEEDSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNFDRSRNFERRRENIGPPSNMGGPPPNMGGQPPNMGGRPQGGNMGGPPPNNWNNGPPQHYGGGPPHMGGGMPPQNNMGGGMRPQNMAGGMPNSAPPNYQQQGQYGSNNGGMPYQSGPGPNSYPPNVGGGNPYQNQNVPGRDMPTSNYE 346
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05861 346 MobiDBLite consensus disorder prediction 324 346 - -
Chla6g05861 346 Pfam Multiple organellar RNA editing factor 1, MORF domain 73 164 IPR054059 -
Chla6g05861 346 MobiDBLite consensus disorder prediction 189 211 - -
Chla6g05861 346 MobiDBLite consensus disorder prediction 189 346 - -
Chla6g05861 346 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 22 212 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
Chla6g05861 346 MobiDBLite consensus disorder prediction 288 313 - -
Chla6g05861 346 MobiDBLite consensus disorder prediction 40 61 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05861 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr6:233857487 Chla7g06617 Chla-Chr7:281187842 dispersed
Chla Chla-Chr3:240747900 Chla6g05861 Chla-Chr6:233857487 transposed
Chla Chla-Chr5:276806198 Chla6g05861 Chla-Chr6:233857487 transposed
Chla Chla-Chr1:70812939 Chla6g05861 Chla-Chr6:233857487 wgd
Chla Chla-Chr6:233857487 Chla6g05873 Chla-Chr6:234094829 wgd