Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chla6g05900 | ATGGCTACTTCTTCGCTCTCGTTTATTCTCTTATCTTTATTCATATCATTCTCAATATCGAATGCCGTTGTTCCTTCGAATGAGACCTTCCGATATGTCAACGAAGGTGATTTTGGAGAATTCCAACTTGAGTCTGAATACACCCCAACCTATCGTCCCCTTGATCCATTTACCTTCCCTTTTCAGCTTTGTTTCTACAACACCACCCCAAATGCCTATTATCTTGGTCTTCGTATGGGGACAAGACGTGATCGATCTCTCATGCGATGGGTCTGGGAGGCCAACCGTGGCTCCCCAGTACGAGAAAATTCCACGTTTTCATTAGGTTCTGATGGAAACCTAATTTTGGCTGAATCAACAGGCCAGGTCGTATGGCAAACCAACACCGCCAATAAAGGCGTTGTTGGTTTTGCCATAGAGTCAGATGGTAACATCGTGCTGAAAGACTCAAGTGGCAACTTCGTATGGCAAAGTTTTGACTCACCTACCGACACTCTCTTGGTAGGCCAAACTTTACGGGTTAACGGTGGCCCTTTCAAGCTCGTGAGTAGGGATTCAATCACTAACAACATTAACGGAGCGTATAGTTTCGTAATAGAGCCTAAAAGACTGGCTTTGTATTATAAGAACAGCATGCGTTATTGGTCATCCACCTTCCCCGAATTAAACCGAGCAAATGTGACTTTAGTTAATGCAACGTTACGCATCGCAGAAACCGAGTATGAAGAGAACAGTTTTCACGTACTTTGGTGTCGTCTAGAGAACGCTCGAGACTTTGAGCAACCGTTATTGCCGTTGGGAACGATTCGATACAATAGCTCGTTATCGTATCTTCGACTAGGCATCGATGGGAACCTAAGACTCTACACGTATCGAGCAAATGTTCGGGGAAACGCGTGGGCGTTATTGTTCACTTTGTTTGAAAGAGGTGTAAGAACCAGTAGGGGGTATCCGGAAGACGAATGTCAATTACCAAGTCGATGCGGAAAATTTGGGCTTTGCGAGGAAAGCCAGTGTGTTGGGTGTCCTACCCCCAACGGTGTGTTTGCGTGGAGCAAGGATTGCGATGTTAAGTTGCCTAGCTGTAATGCGAGTAGTTTCAAATATTACGAGCTTAAAGGGGTTGATCATTTCACGGTTAAGTATACATCTGGGACTAAATCTAGCTTGGATAGTTGCAAGAACAAATGCACGAAGGATTGTAAGTGTATGGGGTATTTTATCACCCGATCGGTCGAAGTGTTGGACAGTTAA | 1254 | 44.66 | MATSSLSFILLSLFISFSISNAVVPSNETFRYVNEGDFGEFQLESEYTPTYRPLDPFTFPFQLCFYNTTPNAYYLGLRMGTRRDRSLMRWVWEANRGSPVRENSTFSLGSDGNLILAESTGQVVWQTNTANKGVVGFAIESDGNIVLKDSSGNFVWQSFDSPTDTLLVGQTLRVNGGPFKLVSRDSITNNINGAYSFVIEPKRLALYYKNSMRYWSSTFPELNRANVTLVNATLRIAETEYEENSFHVLWCRLENARDFEQPLLPLGTIRYNSSLSYLRLGIDGNLRLYTYRANVRGNAWALLFTLFERGVRTSRGYPEDECQLPSRCGKFGLCEESQCVGCPTPNGVFAWSKDCDVKLPSCNASSFKYYELKGVDHFTVKYTSGTKSSLDSCKNKCTKDCKCMGYFITRSVEVLDS | 417 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chla6g05900 | 417 | ProSiteProfiles | PAN-Apple domain profile. | 362 | 417 | IPR003609 | - | |
| Chla6g05900 | 417 | ProSiteProfiles | Bulb-type lectin domain profile. | 39 | 160 | IPR001480 | - | |
| Chla6g05900 | 417 | Gene3D | - | 61 | 161 | IPR036426 | - | |
| Chla6g05900 | 417 | Pfam | D-mannose binding lectin | 91 | 175 | IPR001480 | - | |
| Chla6g05900 | 417 | SMART | blect-4 | 45 | 162 | IPR001480 | - | |
| Chla6g05900 | 417 | PIRSF | SLG | 1 | 415 | IPR035446 | - | |
| Chla6g05900 | 417 | CDD | B-lectin | 45 | 162 | IPR001480 | - | |
| Chla6g05900 | 417 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 70 | 216 | IPR036426 | - | |
| Chla6g05900 | 417 | PANTHER | G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 | 61 | 408 | IPR051343 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chla6g05900 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chla | Chla-Chr6:236322879 | Chla6g05900 | Chla-Chr6:236546312 | dispersed | |
| Chla | Chla-Chr6:236345674 | Chla6g05900 | Chla-Chr6:236546312 | dispersed | |
| Chla | Chla-Chr6:236412498 | Chla6g05900 | Chla-Chr6:236546312 | dispersed | |
| Chla | Chla-Chr6:236546312 | Chla6g05903 | Chla-Chr6:236630304 | dispersed | |
| Chla | Chla-Chr6:236523217 | Chla6g05900 | Chla-Chr6:236546312 | tandem | |
| Chla | Chla-Chr6:236546312 | Chla6g05901 | Chla-Chr6:236583619 | tandem |