AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05900 ATGGCTACTTCTTCGCTCTCGTTTATTCTCTTATCTTTATTCATATCATTCTCAATATCGAATGCCGTTGTTCCTTCGAATGAGACCTTCCGATATGTCAACGAAGGTGATTTTGGAGAATTCCAACTTGAGTCTGAATACACCCCAACCTATCGTCCCCTTGATCCATTTACCTTCCCTTTTCAGCTTTGTTTCTACAACACCACCCCAAATGCCTATTATCTTGGTCTTCGTATGGGGACAAGACGTGATCGATCTCTCATGCGATGGGTCTGGGAGGCCAACCGTGGCTCCCCAGTACGAGAAAATTCCACGTTTTCATTAGGTTCTGATGGAAACCTAATTTTGGCTGAATCAACAGGCCAGGTCGTATGGCAAACCAACACCGCCAATAAAGGCGTTGTTGGTTTTGCCATAGAGTCAGATGGTAACATCGTGCTGAAAGACTCAAGTGGCAACTTCGTATGGCAAAGTTTTGACTCACCTACCGACACTCTCTTGGTAGGCCAAACTTTACGGGTTAACGGTGGCCCTTTCAAGCTCGTGAGTAGGGATTCAATCACTAACAACATTAACGGAGCGTATAGTTTCGTAATAGAGCCTAAAAGACTGGCTTTGTATTATAAGAACAGCATGCGTTATTGGTCATCCACCTTCCCCGAATTAAACCGAGCAAATGTGACTTTAGTTAATGCAACGTTACGCATCGCAGAAACCGAGTATGAAGAGAACAGTTTTCACGTACTTTGGTGTCGTCTAGAGAACGCTCGAGACTTTGAGCAACCGTTATTGCCGTTGGGAACGATTCGATACAATAGCTCGTTATCGTATCTTCGACTAGGCATCGATGGGAACCTAAGACTCTACACGTATCGAGCAAATGTTCGGGGAAACGCGTGGGCGTTATTGTTCACTTTGTTTGAAAGAGGTGTAAGAACCAGTAGGGGGTATCCGGAAGACGAATGTCAATTACCAAGTCGATGCGGAAAATTTGGGCTTTGCGAGGAAAGCCAGTGTGTTGGGTGTCCTACCCCCAACGGTGTGTTTGCGTGGAGCAAGGATTGCGATGTTAAGTTGCCTAGCTGTAATGCGAGTAGTTTCAAATATTACGAGCTTAAAGGGGTTGATCATTTCACGGTTAAGTATACATCTGGGACTAAATCTAGCTTGGATAGTTGCAAGAACAAATGCACGAAGGATTGTAAGTGTATGGGGTATTTTATCACCCGATCGGTCGAAGTGTTGGACAGTTAA 1254 44.66 MATSSLSFILLSLFISFSISNAVVPSNETFRYVNEGDFGEFQLESEYTPTYRPLDPFTFPFQLCFYNTTPNAYYLGLRMGTRRDRSLMRWVWEANRGSPVRENSTFSLGSDGNLILAESTGQVVWQTNTANKGVVGFAIESDGNIVLKDSSGNFVWQSFDSPTDTLLVGQTLRVNGGPFKLVSRDSITNNINGAYSFVIEPKRLALYYKNSMRYWSSTFPELNRANVTLVNATLRIAETEYEENSFHVLWCRLENARDFEQPLLPLGTIRYNSSLSYLRLGIDGNLRLYTYRANVRGNAWALLFTLFERGVRTSRGYPEDECQLPSRCGKFGLCEESQCVGCPTPNGVFAWSKDCDVKLPSCNASSFKYYELKGVDHFTVKYTSGTKSSLDSCKNKCTKDCKCMGYFITRSVEVLDS 417
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05900 417 ProSiteProfiles PAN-Apple domain profile. 362 417 IPR003609 -
Chla6g05900 417 ProSiteProfiles Bulb-type lectin domain profile. 39 160 IPR001480 -
Chla6g05900 417 Gene3D - 61 161 IPR036426 -
Chla6g05900 417 Pfam D-mannose binding lectin 91 175 IPR001480 -
Chla6g05900 417 SMART blect-4 45 162 IPR001480 -
Chla6g05900 417 PIRSF SLG 1 415 IPR035446 -
Chla6g05900 417 CDD B-lectin 45 162 IPR001480 -
Chla6g05900 417 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 216 IPR036426 -
Chla6g05900 417 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 61 408 IPR051343 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05900 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr6:236322879 Chla6g05900 Chla-Chr6:236546312 dispersed
Chla Chla-Chr6:236345674 Chla6g05900 Chla-Chr6:236546312 dispersed
Chla Chla-Chr6:236412498 Chla6g05900 Chla-Chr6:236546312 dispersed
Chla Chla-Chr6:236546312 Chla6g05903 Chla-Chr6:236630304 dispersed
Chla Chla-Chr6:236523217 Chla6g05900 Chla-Chr6:236546312 tandem
Chla Chla-Chr6:236546312 Chla6g05901 Chla-Chr6:236583619 tandem