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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g05901 ATGAAAAGTTCGATTAATGTGCTTTTAAATATCTCTGATATAGCTATGGCTACTTCTTCGCTCTTGTTTATTTTCTTATGTTTATTCATATCATTCTCAATATCGAATGCCATTGTTCCTTCGAATGAGACCTTCCGATATGTCAACCAAGGTGATTTTGCAGATTCCGAATTTAACTCTGAATACGGCCCAAACTCTGAATACACCACAACCTATCGTCCCCTTGATCTATTTACCTTCCCTTTTCAGCTTGTTTTCTACAACACCACCCCAAATGCCTATTATCTTGGTCTTCGTATGGGGTCAAGACGTGATGAATCTCTCATGCGATGGGTCTGGGAAGCCAACCGTGGCTCCCCAGTACGAGAAAATGCCACATTTTCATTAGGTTCTGATGGGAACCTTATTTTGGCCGAATCAACCGGCCAAATTGTATGGCAAACCAATACCGTCAATAAAGGCGTTTTTGGTTTTGCCATAGAGTCAGATGGTAACATCGTGCTGAAAGACTCAAGTGGCAACTTCGTATGGCAGAGTTTTGACTCACCTACCGACACTCTCTTGGTAGGCCAAACTTTAAGAGTTAACGGAGGCCCTTTCAAGCTCGTGAGTAGGGATTCAATCACTAACAACGTTAACGGAGCGTATAGTTTCGTAATAGAGCCTAAAAGACTGGCTTTGTATTATAAGAACAGCATGCGTTATTGGTCATCCACCTTCCCCGAATTAAACCCATCAAATGTGACTATAGTTAATGCAACACTACAAATTGCAGATGCCGAATATCAAGAGAACAATTTTCACGTACTTCGGTGTCGTTTAGAGAACCCTCGGCCTAACTTTGAACGACCGTCTTTACGTTTTGGAAGGATTCGATACAATAGCTCGTTATCGTATCTTCGACTAGGCATCGATGGGAACCTTAGACTCTACACTTATCTTAGAGGTGCGCGGGGAGACGCGTGGGCGTTATTGTTCACTTTGTTCGATAACGATGTAAAACCAGCAGGGGGCAGATGA 1020 42.65 MKSSINVLLNISDIAMATSSLLFIFLCLFISFSISNAIVPSNETFRYVNQGDFADSEFNSEYGPNSEYTTTYRPLDLFTFPFQLVFYNTTPNAYYLGLRMGSRRDESLMRWVWEANRGSPVRENATFSLGSDGNLILAESTGQIVWQTNTVNKGVFGFAIESDGNIVLKDSSGNFVWQSFDSPTDTLLVGQTLRVNGGPFKLVSRDSITNNVNGAYSFVIEPKRLALYYKNSMRYWSSTFPELNPSNVTIVNATLQIADAEYQENNFHVLRCRLENPRPNFERPSLRFGRIRYNSSLSYLRLGIDGNLRLYTYLRGARGDAWALLFTLFDNDVKPAGGR 339
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g05901 339 ProSiteProfiles Bulb-type lectin domain profile. 60 181 IPR001480 -
Chla6g05901 339 CDD B-lectin 66 183 IPR001480 -
Chla6g05901 339 SUPERFAMILY alpha-D-mannose-specific plant lectins 107 238 IPR036426 -
Chla6g05901 339 Gene3D - 78 182 IPR036426 -
Chla6g05901 339 SMART blect-4 66 183 IPR001480 -
Chla6g05901 339 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 82 323 IPR051343 -
Chla6g05901 339 Pfam D-mannose binding lectin 112 196 IPR001480 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g05901 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr6:236583619 Chla6g05950 Chla-Chr6:239573641 dispersed
Chla Chla-Chr6:236583619 Chla6g05903 Chla-Chr6:236630304 proximal
Chla Chla-Chr6:236546312 Chla6g05901 Chla-Chr6:236583619 tandem