AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chla6g06047 | ATGTCATCAAAATCCACTACTAGTAGAACCAAAAGTAACTCATCAAGATTGAAACATGATGCTAGAGTTGTGTCCCAAACACCAATTGATGCTAAACTCCATGTTGATTTTGAAGAGTCTGATAAGAAATTTGATTATTCAACTTCAGTTGATGTTAATAATACATCAACTTCAAATAGTACTATTGTGCCGTCTTCTACTGTATCAGCTTATCTTCAGAAAATGCAAAGAGGCAGTCTAATTCAGCCTTTTGGTTGTATGATTGCTATTGATGATCAAACTCTGACTGTCTTGGCGTATAGTGAAAACGCGCTTGAGATGCTTGATTTAGCTCCTCATGCTGTCCCTAATATTGAGCAGCAAGATGCTTTAACGTTTGGGACGGATATTCGTACTCTTTTTAGACCTTCGGGTGCTTCTGCGCTTCAAAAAGCTGCGAAATATCCGGATGTTCATTTGATAAACCCGATTGTGCTTCATTGTAAGAGTTCAGGTAAACCCTTTTACGCGATTTTGCATAGGAATGATGTTGGGTTGGTTATGGATTTAGAGGCTGTGAATCCTGCTGACGTGCCTGTAGCTACAGCTGCTGGTGCTTTAATGTCGTATAAACTAGCTTCTAAATCGATTACTAGGTTACAGTCTTTGCAAAGTGGGAATACTTCAAGACTTTGTGATGTGTTGGTTAAAGAAGTGAGTGAGCTAACGGGTTATGATCGTGTTATGGTTTATAAGTTTCATGAAGATGAACATGGGGAAGTTATTGCTGAGTGTCGAAAGACTGACCTCGAGCCTTATCTTGGGTTGCATTACCCTGCTACTGATATCCCACAAGCTTCACGGTTCCTTTTTATGAAAAATAAAGTTAGGATGATTTGTGATTGTTTGGCTACACCAGTGAAAGTGATTCAATCAAAACATTTAGACCAGCCATTGAATCTTTCGGGGTCCGCTTTAAGAGCACCACATGGATGTCATGCACAATATATGTCAAATATGGGGTCAATTGCGTCGCTTGTGATGTCTGTGACAATCAATGATGGTGATGATGACGATGATGATGTCAACGAGTCTGAAAGTGAGATAAATCAGCAACAAAAACAAAAGGGGAAAAGATTATGGGGTTTAGTTGTTTGTCATCATTCAAGTCCTCGGTTTGTACCTTTTCCTTTAAGGTACGGTTGTGATTTTCTGATGCAGGTTTTCAGTGTTCAAATAAGTAAAGAAGTTGAGTTGACTAGTCAACTACGAGAAAAACATATCTTGAAAACACAATCTGTGCTTTGTGATATGCTTTTGAGAGATGCTCCAATAGGGATCATGACTCAGTCACCAAATGTAATGGATCTTGTTAAATGTGACGGGGCTGCACTGTACTACAAAAACAAGTTTTGGGTACTCGGGGTAACACCAACCGAGTATCAAATCAAAGATATAGCAAACTGGCTTCTAAAAGAACATGTTGGGAGTACAGGGTTAAGTACGGATAGTTTAGTGGATGCTGGATATCCAAACGCATATGTTCTTGGAAAAGCCGTTTGCGGAATGGCAGCTGTTAAGATCACCTCTAAAGATTTTCTTTTTTGGTATCGGTCACATACTGCAAAAGAAGTGAAATGGGGTGGGGCCAAACATGATCCGGATGATAAAGATGATGTGAGGAAAATGCATCCTCGATCATCATTTAAAGCGTTTTGGACAGGGTCTTTGCAAAATGATGATGAAATGAGTAATGATGATGATAAAAAGATTGTTAGTGTCCCTGCGGTCGATACGAGTATACAAAGGGTTGATGAATTGAGGGTTGTGGCTAATGAAATGGTTAGGCTTATTGAGACAGCTTCTGTTCCTATATTTGCTGTTGATGGCGACGGGAATATTAGTGGTTGGAATGATAAAATGGGTGAGCTTACTGGGCTGCCGTTGCTTGAAGCTGTTGGTATCCCATTAGTTAATTTGGTTGTTGATGATTCAGTTAATGAAGTCAAAGCCATGCTCTCCTCTGCTTTACGAGGCATAGAGAATAAAGACGTTGAAATCAACTTTAAATGTTTCAAGAGTCAAGAAAGCCACAATCACATTACCCTTGTTGCAAACGCTTGTTGTAGCCGTGATTTACAGGAAACAATAGTGGGGGTATGCTTTGTTGGACAAGATCTAACGGCCCAAAAGTTAATCACAGAAAAATATTCAAAAGTTAAAGGTGATTACACTAGTATAGTCCGCAGCCCATGTGCACTCATTCCTCCAATTTTCATGATGGACGAGTACGGGAAATGCCTAGAATGGAATGACGCCATGCAAAGATTAACCGGTTTGAGGAGGGAAGAAGCCAACAATAAGATGCTTTTAGGTGAAGTTTTCACCGTTGGTAGTTTTGGTTGTCGGGTCAAAGATGAAGATACTTTGACCCGACTAAGAATACTACTAAACGAGGTGATTTCAGGGTTGGATTCAGATAAATTGTTGTTTGGGTTTTTTGACCAAAATGGTAAGTATGTCGAGGCATTACTTTCTGCTAACAAAAGGGTTGATTCAGAGGGAAAGATTACAGGCGTTTTGTGTTTTTTACATGTGACGAGCCCTGAGCTTCAACATGCTATGTTGGTGCAACGAATGTCTGAACAGGCTGCTTTGAATAGTCTTGCGAAAGTTACTTATTTGCGTCAAGAACTTAAGAGTGGATTGAATGGGATTAAGTGTATTGAAAATCTGATGGAATCGAGTGAGCTGGGTGGAGAGCAGAGATGCGTCTTACGTAAAAGTCATTTGTGTCGAGAGCAATTAGCACAGATTGTTGATGATTCTGATATACAGAGCATTGAGGAATGTTATTTGGAAATGAAATGTGCTGAATTTAGACTCGGGGAGTCATTGGAGGTGGTTTTAAACCAAGTAACACTTTTGGGCCGTGAGCGGAAGGTGGAGGTCATTTATGATGTGCCCGAACAAGTGTTATCTTTGTCTTTATTTGGTGACAATTTGAGGCTTCAACAAGTCCTTTCTGACTTCTTGTCAAATGCTCTCTACTTCACTCCTGAAGTCGAAGGATCTTCTGTTTCTTTCCGTGCCACTCACAGGATGGAACACATAGGTGCGAAGATACAAGTCGCACATCTCGAATTCAGGATAACCCATCCGGCACCAGGGATACCCGAGAAGTTGGTTCAAGATATGTTTCACACCAGCCGAAGTGCCTCAAGAGAAGGTCTTGGACTTTACATCAGTCAAAAGCTCGTAAAGACCATGAACGGGACTGTACAATATCTTAGAGAGGCTGAGAGAGCTTCTTTCATTGTCTTGATTGAGTTTCCTGTAGCGCTCCCGTTGACCGCTGACACCAAACGTTCAAAAAGGATCTGA | 3363 | 40.59 | MSSKSTTSRTKSNSSRLKHDARVVSQTPIDAKLHVDFEESDKKFDYSTSVDVNNTSTSNSTIVPSSTVSAYLQKMQRGSLIQPFGCMIAIDDQTLTVLAYSENALEMLDLAPHAVPNIEQQDALTFGTDIRTLFRPSGASALQKAAKYPDVHLINPIVLHCKSSGKPFYAILHRNDVGLVMDLEAVNPADVPVATAAGALMSYKLASKSITRLQSLQSGNTSRLCDVLVKEVSELTGYDRVMVYKFHEDEHGEVIAECRKTDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLATPVKVIQSKHLDQPLNLSGSALRAPHGCHAQYMSNMGSIASLVMSVTINDGDDDDDDVNESESEINQQQKQKGKRLWGLVVCHHSSPRFVPFPLRYGCDFLMQVFSVQISKEVELTSQLREKHILKTQSVLCDMLLRDAPIGIMTQSPNVMDLVKCDGAALYYKNKFWVLGVTPTEYQIKDIANWLLKEHVGSTGLSTDSLVDAGYPNAYVLGKAVCGMAAVKITSKDFLFWYRSHTAKEVKWGGAKHDPDDKDDVRKMHPRSSFKAFWTGSLQNDDEMSNDDDKKIVSVPAVDTSIQRVDELRVVANEMVRLIETASVPIFAVDGDGNISGWNDKMGELTGLPLLEAVGIPLVNLVVDDSVNEVKAMLSSALRGIENKDVEINFKCFKSQESHNHITLVANACCSRDLQETIVGVCFVGQDLTAQKLITEKYSKVKGDYTSIVRSPCALIPPIFMMDEYGKCLEWNDAMQRLTGLRREEANNKMLLGEVFTVGSFGCRVKDEDTLTRLRILLNEVISGLDSDKLLFGFFDQNGKYVEALLSANKRVDSEGKITGVLCFLHVTSPELQHAMLVQRMSEQAALNSLAKVTYLRQELKSGLNGIKCIENLMESSELGGEQRCVLRKSHLCREQLAQIVDDSDIQSIEECYLEMKCAEFRLGESLEVVLNQVTLLGRERKVEVIYDVPEQVLSLSLFGDNLRLQQVLSDFLSNALYFTPEVEGSSVSFRATHRMEHIGAKIQVAHLEFRITHPAPGIPEKLVQDMFHTSRSASREGLGLYISQKLVKTMNGTVQYLREAERASFIVLIEFPVALPLTADTKRSKRI | 1120 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chla6g06047 | 1120 | SMART | pas-2 | 735 | 804 | IPR000014 | - | |
| Chla6g06047 | 1120 | SMART | pas-2 | 605 | 671 | IPR000014 | - | |
| Chla6g06047 | 1120 | PIRSF | Phytochrome-conventional | 1 | 567 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Chla6g06047 | 1120 | PIRSF | Phytochrome-conventional | 566 | 1115 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Chla6g06047 | 1120 | Gene3D | PAS domain | 78 | 323 | - | - | |
| Chla6g06047 | 1120 | CDD | PAS | 614 | 680 | IPR000014 | - | |
| Chla6g06047 | 1120 | Gene3D | PAS domain | 593 | 734 | - | - | |
| Chla6g06047 | 1120 | ProSiteProfiles | PAS repeat profile. | 733 | 788 | IPR000014 | - | |
| Chla6g06047 | 1120 | Pfam | GAF domain | 222 | 409 | IPR003018 | GO:0005515(InterPro) | |
| Chla6g06047 | 1120 | Gene3D | - | 201 | 565 | IPR029016 | - | |
| Chla6g06047 | 1120 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 992 | 1105 | IPR003594 | - | |
| Chla6g06047 | 1120 | PRINTS | Phytochrome signature | 606 | 622 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Chla6g06047 | 1120 | PRINTS | Phytochrome signature | 235 | 254 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Chla6g06047 | 1120 | PRINTS | Phytochrome signature | 625 | 640 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Chla6g06047 | 1120 | PRINTS | Phytochrome signature | 134 | 156 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Chla6g06047 | 1120 | PRINTS | Phytochrome signature | 320 | 341 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Chla6g06047 | 1120 | PRINTS | Phytochrome signature | 440 | 460 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Chla6g06047 | 1120 | PRINTS | Phytochrome signature | 698 | 715 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Chla6g06047 | 1120 | PRINTS | Phytochrome signature | 718 | 738 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Chla6g06047 | 1120 | FunFam | Phytochrome | 945 | 1106 | - | - | |
| Chla6g06047 | 1120 | SUPERFAMILY | GAF domain-like | 205 | 407 | - | - | |
| Chla6g06047 | 1120 | SUPERFAMILY | ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase | 954 | 1105 | IPR036890 | - | |
| Chla6g06047 | 1120 | CDD | HATPase-Phy-like | 991 | 1104 | IPR044767 | - | |
| Chla6g06047 | 1120 | NCBIfam | PAS domain S-box protein | 610 | 728 | IPR000014 | - | |
| Chla6g06047 | 1120 | SUPERFAMILY | GAF domain-like | 418 | 566 | - | - | |
| Chla6g06047 | 1120 | Pfam | Phytochrome region | 423 | 565 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Chla6g06047 | 1120 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 750 | 855 | IPR035965 | - | |
| Chla6g06047 | 1120 | Pfam | PAS fold | 739 | 858 | IPR013767 | GO:0006355(InterPro) | |
| Chla6g06047 | 1120 | Pfam | PAS fold | 606 | 719 | IPR013767 | GO:0006355(InterPro) | |
| Chla6g06047 | 1120 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 75 | 188 | IPR035965 | - | |
| Chla6g06047 | 1120 | ProSiteProfiles | Histidine kinase domain profile. | 887 | 1108 | IPR005467 | - | |
| Chla6g06047 | 1120 | MobiDBLite | consensus disorder prediction | 348 | 367 | - | - | |
| Chla6g06047 | 1120 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 594 | 715 | IPR035965 | - | |
| Chla6g06047 | 1120 | SMART | gaf-1 | 220 | 420 | IPR003018 | GO:0005515(InterPro) | |
| Chla6g06047 | 1120 | Gene3D | - | 925 | 1100 | IPR036890 | - | |
| Chla6g06047 | 1120 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 220 | 400 | IPR016132 | - | |
| Chla6g06047 | 1120 | PANTHER | OS08G0260000 PROTEIN | 1 | 983 | - | - | |
| Chla6g06047 | 1120 | SMART | HKATPase-4 | 992 | 1108 | IPR003594 | - | |
| Chla6g06047 | 1120 | CDD | PAS | 747 | 858 | IPR000014 | - | |
| Chla6g06047 | 1120 | Gene3D | PAS domain | 749 | 864 | - | - | |
| Chla6g06047 | 1120 | Gene3D | - | 415 | 534 | IPR043150 | - | |
| Chla6g06047 | 1120 | Pfam | PAS fold | 70 | 185 | IPR013654 | GO:0006355(InterPro) | |
| Chla6g06047 | 1120 | FunFam | Phytochrome | 415 | 547 | - | - | |
| Chla6g06047 | 1120 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 320 | 329 | IPR013516 | - | |
| Chla6g06047 | 1120 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Chla6g06047 | 1120 | ProSiteProfiles | PAS repeat profile. | 603 | 673 | IPR000014 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chla6g06047 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chla | Chla-Chr6:243898974 | Chla9g01474 | Chla-Chr9:42289779 | dispersed | |
| Chla | Chla-Chr6:243722265 | Chla6g06047 | Chla-Chr6:243898974 | proximal |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Chla3g05995 | . | 5 | 921 | Histidine Kinase gene family | AT5G10720 | 60.841 | 0.0 | 1073.0 | |
| Chla7g02420 | . | 18 | 1118 | Histidine Kinase gene family | AT2G47430 | 33.245 | 6.40e-165 | 513.0 | |
| Chla4g06178 | . | 3 | 674 | Histidine Kinase gene family | AT2G47430 | 27.626 | 6.88e-64 | 231.0 | |
| Chla1g04057 | . | 251 | 333 | Histidine Kinase gene family | AT5G10720 | 50.602 | 5.15e-20 | 81.6 | |
| Chla4g02188 | . | 1066 | 1139 | Histidine Kinase gene family | AT2G17820 | 36.486 | 1.35e-06 | 42.4 | |
| Chla4g05819 | . | 481 | 1052 | Histidine Kinase gene family | AT2G47430 | 33.278 | 5.22e-72 | 246.0 | |
| Chla6g03215 | . | 874 | 911 | Histidine Kinase gene family | AT2G17820 | 50.0 | 2.20e-06 | 43.9 | |
| Chla2g02674 | . | 106 | 1120 | Histidine Kinase gene family | AT1G09570 | 67.882 | 0.0 | 1467.0 | |
| Chla2g07536 | . | 221 | 331 | Histidine Kinase gene family | AT5G10720 | 48.649 | 9.03e-31 | 112.0 | |
| Chla5g04217 | . | 223 | 317 | Histidine Kinase gene family | AT2G01830 | 42.105 | 1.94e-15 | 70.9 | |
| Chla6g06047 | . | 2 | 1110 | Histidine Kinase gene family | AT5G35840 | 59.216 | 0.0 | 1379.0 | |
| Chla4g05820 | . | 3 | 414 | Histidine Kinase gene family | AT2G47430 | 25.858 | 1.23e-28 | 117.0 | |
| Chla9g04447 | . | 1039 | 1090 | Histidine Kinase gene family | AT2G17820 | 65.385 | 1.86e-12 | 65.5 | |
| Chla8g04053 | . | 27 | 1197 | Histidine Kinase gene family | AT2G17820 | 62.5 | 0.0 | 1453.0 | |
| Chla2g04946 | ACH | 53 | 1172 | Histidine Kinase gene family | AT2G18790 | 72.014 | 0.0 | 1726.0 | |
| Chla8g05982 | . | 1038 | 1129 | Histidine Kinase gene family | AT2G17820 | 48.913 | 7.02e-14 | 72.0 | |
| Chla7g01423 | . | 397 | 490 | Histidine Kinase gene family | AT5G10720 | 85.106 | 6.17e-47 | 166.0 | |
| Chla26884g00005 | . | 25 | 960 | Histidine Kinase gene family | AT2G17820 | 61.612 | 0.0 | 1165.0 | |
| Chla26810g00003 | . | 263 | 318 | Histidine Kinase gene family | AT2G01830 | 57.143 | 4.37e-15 | 66.6 | |
| Chla3g02362 | ACH | 35 | 1154 | Histidine Kinase gene family | AT2G18790 | 74.866 | 0.0 | 1785.0 | |
| Chla7g03145 | . | 690 | 720 | Histidine Kinase gene family | AT2G17820 | 71.875 | 4.30e-09 | 48.1 | |
| Chla3g06002 | . | 164 | 317 | Histidine Kinase gene family | AT5G10720 | 55.844 | 5.49e-55 | 183.0 | |
| Chla9g04629 | . | 80 | 164 | Histidine Kinase gene family | AT2G17820 | 65.169 | 2.10e-29 | 108.0 | |
| Chla7g02419 | . | 130 | 1118 | Histidine Kinase gene family | AT2G47430 | 31.729 | 2.62e-125 | 405.0 | |
| Chla4g05817 | . | 8 | 1118 | Histidine Kinase gene family | AT2G47430 | 29.174 | 7.08e-114 | 376.0 | |
| Chla9g01474 | . | 1 | 920 | Histidine Kinase gene family | AT5G10720 | 56.873 | 0.0 | 1031.0 | |
| Chla6g06045 | . | 2 | 1110 | Histidine Kinase gene family | AT5G35840 | 57.839 | 0.0 | 1353.0 |