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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g06055 ATGGAATCATTCGATATAATGCAAAACCACCTTCTGCAAATATTAGCATTGTTTGCAATGGAAACACCTGTTAGTTTAGACGAGGACATTAGAAATGAAAAGGGGGAAAGACGCCAGGATACACAGAGGACCCGACTGTCCCAAACGATAGCATCACTCCAACTTTGCAGCAGCAGCACTTTTATTGATAATGCTCGGGATGGTGTTCCTTTCCTCATGAAAGCTGGAAAGGCCCTGAATACTAGACGGCGGAGATCAGAGTTCAATTCAGACATGTTCCAGGTAACCTGTATAAACGAAACTTTGGGACAGATATGGACAAAGCTAAACGAACTTGTGCTTCGTAGCAGCCCAATGAAGCCATATTTTAAAATCAATAACAAGATCCCTGGTCTTGGTATGAGGCTCGACAGAAGTGACCTTAATTTGCTCTACAGCACGAGGAAATACCGGATGCATACGAGGCTTTTATTGGACGCGATAGAAGGAGAAAGGAGATTGTTTATAAGAAGTGATGAGCTTGATGCTGCATGGTCTATATTTACCCCATTGTTGAAAGAACTTGAGTCTAACAAGATTGCACCGAGTTATATCCGTATGGTAGTAGAGGACGGTTGGAGCTCATTATCTGGCTGCAAATACAATCCGCTGGATGAAAGACCAAAAGCAAAACAGATTGAGTATAATGAGATATCAGTAAGTAGTGTTTTAGAAGAAGAAACTGAAGTAAAAGTTGATGATGGTGAAGATCAAGCTGAACATATAGAAGCAGAAGACGTTGGTTGGGCAGACTTTCATCATGAAATAATATTGACAACTGAAGTTAAAGTTGAAGAGGAAGAGGAAGGACATATTGAGACGTTGTTGGTTGATGCTGATGATCATGAAGATCAGACTGACGACATGGATATAGAATCGCTTGTTCATGCTAACTGTCATCACGAAACGATATTAACATCTGAAGGTGAAACTGAAGAGGAAGGACATGATGATCAAGAAGAAGATGTAAATGAGCTAAACCAGAAATGTGATGCATTTATACATAGAATGAGGCTAAGCTGGCTAACAATGCATCTTGAAGCTAATTCATCCATTGTACTTGATTCTCATTAG 1113 40.16 MESFDIMQNHLLQILALFAMETPVSLDEDIRNEKGERRQDTQRTRLSQTIASLQLCSSSTFIDNARDGVPFLMKAGKALNTRRRRSEFNSDMFQVTCINETLGQIWTKLNELVLRSSPMKPYFKINNKIPGLGMRLDRSDLNLLYSTRKYRMHTRLLLDAIEGERRLFIRSDELDAAWSIFTPLLKELESNKIAPSYIRMVVEDGWSSLSGCKYNPLDERPKAKQIEYNEISVSSVLEEETEVKVDDGEDQAEHIEAEDVGWADFHHEIILTTEVKVEEEEEGHIETLLVDADDHEDQTDDMDIESLVHANCHHETILTSEGETEEEGHDDQEEDVNELNQKCDAFIHRMRLSWLTMHLEANSSIVLDSH 370
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g06055 370 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 5 196 - -
Chla6g06055 370 PRINTS Glucose-6-phosphate dehydrogenase signature 65 91 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Chla6g06055 370 PRINTS Glucose-6-phosphate dehydrogenase signature 7 23 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Chla6g06055 370 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 59 197 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
Chla6g06055 370 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 5 36 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
Chla6g06055 370 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 5 36 IPR001282 GO:0004345(PANTHER)|GO:0006006(InterPro)|GO:0006006(PANTHER)|GO:0009051(PANTHER)|GO:0009570(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Chla6g06055 370 Coils Coil 238 258 - -
Chla6g06055 370 Gene3D Dihydrodipicolinate Reductase; domain 2 54 201 - -
Chla6g06055 370 Coils Coil 329 349 - -
Chla6g06055 370 Gene3D Dihydrodipicolinate Reductase; domain 2 4 53 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g06055 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr6:244059749 Chla7g03051 Chla-Chr7:134041622 dispersed
Chla Chla-Chr6:244033286 Chla6g06055 Chla-Chr6:244059749 proximal
Chla Chla-Chr6:244034992 Chla6g06055 Chla-Chr6:244059749 tandem
Chla Chla-Chr6:244059749 Chla6g06056 Chla-Chr6:244076139 tandem