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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g06492 ATGGCATATCAAGTGTTGGAGCGTAGCCAACCAGTTGATCTCTCAAAGCACCCATCGGGAATTGTTCCCACTCTTCAGAATATTGTGTCTACTGTCGATCTTGATTGCAAGCTAAACCTGAACGCGATTGCACAGAAAGCTCGTAATGCAGAATACAACCCCAAGCGTTTTGCTGCTGTTATCATGAGGATACGAGAACCAAAAACAACAGCTTTAATATTTTCTTCCGGGAGAATGGTATGTACAGGAGCTAAGAGTGAGCAGGAGTCAAAAATGGCAGCACGGAAGTATGCTCGGATCATTCAGAAACTCGGATTTCCAGCCAAATTTAAGGATTTCAAGATTCAAAATATCGTTGGCTCATGTGATGTAAAATTTCCCATTAGGCTTGAAGAGCTTGATGAGTCCTCTCACAGTGCCTTTACAAGTTATGAACCAGAACTGTTTCCGGGACTGATATATCGAATGAAACAACCGAAAATCGTTCTGCTTATTTTTTTATCTGGAAAGATTGTTCTCACGGGAGCCAAGGTAAAAGGCGAGACTTATGCTGCATTCGAGAACATATATCCCGTCCTTACTGAATTCAGAAAGAGTAAAAATGATTCTTGA 612 41.34 MAYQVLERSQPVDLSKHPSGIVPTLQNIVSTVDLDCKLNLNAIAQKARNAEYNPKRFAAVIMRIREPKTTALIFSSGRMVCTGAKSEQESKMAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEELDESSHSAFTSYEPELFPGLIYRMKQPKIVLLIFLSGKIVLTGAKVKGETYAAFENIYPVLTEFRKSKNDS 203
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g06492 203 PRINTS Transcription initiation factor TFIID signature 140 155 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chla6g06492 203 PRINTS Transcription initiation factor TFIID signature 159 175 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chla6g06492 203 PRINTS Transcription initiation factor TFIID signature 68 86 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chla6g06492 203 PRINTS Transcription initiation factor TFIID signature 25 40 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chla6g06492 203 PRINTS Transcription initiation factor TFIID signature 49 68 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chla6g06492 203 PRINTS Transcription initiation factor TFIID signature 115 131 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chla6g06492 203 FunFam TATA-box-binding protein 2 30 113 - -
Chla6g06492 203 Gene3D - 30 115 IPR012295 -
Chla6g06492 203 FunFam TATA-box-binding protein 2 114 196 - -
Chla6g06492 203 SUPERFAMILY TATA-box binding protein-like 107 197 - -
Chla6g06492 203 CDD TBP-eukaryotes 22 196 IPR033710 GO:0003677(InterPro)|GO:0006352(InterPro)
Chla6g06492 203 ProSitePatterns Transcription factor TFIID repeat signature. 144 193 IPR030491 -
Chla6g06492 203 Gene3D - 26 195 IPR012295 -
Chla6g06492 203 SUPERFAMILY TATA-box binding protein-like 21 114 - -
Chla6g06492 203 Hamap TATA-box-binding protein [tbp]. 19 199 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chla6g06492 203 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 112 196 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chla6g06492 203 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 23 104 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chla6g06492 203 PANTHER TATA-BOX BINDING PROTEIN 9 200 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)|GO:0006352(PANTHER)|GO:0016251(PANTHER)|GO:0140223(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g06492 K03120 transcription initiation factor TFIID TATA-box-binding protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
41878 Chla2g01741 Chla6g06492
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr6:11285386 Chla6g06492 Chla-Chr6:266239693 dispersed
Chla Chla-Chr6:11473945 Chla6g06492 Chla-Chr6:266239693 dispersed
Chla Chla-Chr6:81186669 Chla6g06492 Chla-Chr6:266239693 dispersed
Chla Chla-Chr2:54545251 Chla6g06492 Chla-Chr6:266239693 wgd