AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g06507 ATGGCCAAAAATTCGGTTGCTTACCTTGGCTTCCTTCTGCTTCTCATTGTTGCTATCTCAGAAATCACGACTGTGAAGGGAGAATTATGCGAGAAAGCGAGCAAGACATGGACTGGAAATTGTGGAAATACAAGACACTGTGATGATCAATGCAAGTCGTGGGAGGGTGCAGCCCATGGAGCTTGCCACGTACGTGGGGGGAAACACATGTGTTTTTGCTACTTCAATTGTCCCAAAGCCGCGAAGCTGGCTCAAGATAAACTGAAAGCCGAAGAGCTAGCTAAGAATAAGATTGAAGCGGAGAAAGTGCCACATTTGGAAGATCCTGCGCCACCACACTTTTAA 345 46.67 MAKNSVAYLGFLLLLIVAISEITTVKGELCEKASKTWTGNCGNTRHCDDQCKSWEGAAHGACHVRGGKHMCFCYFNCPKAAKLAQDKLKAEELAKNKIEAEKVPHLEDPAPPHF 114
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g06507 114 SMART gth-4 29 77 IPR003614 GO:0006952(InterPro)
Chla6g06507 114 Gene3D - 29 77 IPR036574 -
Chla6g06507 114 Coils Coil 81 101 - -
Chla6g06507 114 Pfam Gamma-thionin family 29 77 - -
Chla6g06507 114 CDD Knot1 39 74 IPR003614 GO:0006952(InterPro)
Chla6g06507 114 SUPERFAMILY Scorpion toxin-like 28 77 IPR036574 -
Chla6g06507 114 PANTHER DEFENSIN-LIKE PROTEIN 1 1 77 - GO:0006952(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g06507 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr2:55976108 Chla6g06507 Chla-Chr6:266770258 dispersed
Chla Chla-Chr6:266542906 Chla6g06507 Chla-Chr6:266770258 dispersed
Chla Chla-Chr6:266770258 Chla6g06520 Chla-Chr6:267186049 dispersed
Chla Chla-Chr6:266708111 Chla6g06507 Chla-Chr6:266770258 tandem
Chla Chla-Chr6:266770258 Chla6g06508 Chla-Chr6:266798502 tandem
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chla1g04503 . 16 60 Plant Defensins gene family AT1G19610 46.667 2.12e-08 46.2
Chla7g01370 . 7 76 Plant Defensins gene family AT1G61070 39.437 3.85e-13 56.6
Chla1g02567 . 2 78 Plant Defensins gene family AT1G19610 39.241 1.35e-12 55.8
Chla2g01758 . 9 78 Plant Defensins gene family AT1G19610 50.0 5.20e-21 77.0
Chla6g06508 . 1 78 Plant Defensins gene family AT1G19610 52.564 8.65e-27 93.2
Chla7g01323 . 7 77 Plant Defensins gene family AT2G02120 35.211 6.17e-12 53.5
Chla7g01372 . 11 76 Plant Defensins gene family AT1G61070 36.364 8.31e-12 53.1
Chla6g06516 . 3 78 Plant Defensins gene family AT1G19610 43.421 6.35e-16 65.9
Chla9g00536 . 3 77 Plant Defensins gene family AT2G02100 51.25 5.94e-24 84.7
Chla7g01371 . 7 77 Plant Defensins gene family AT2G02120 29.885 1.34e-08 45.8
Chla6g06514 . 13 78 Plant Defensins gene family AT1G19610 46.97 2.27e-16 67.0
Chla1g03475 . 11 78 Plant Defensins gene family AT1G19610 55.882 1.27e-23 84.7
Chla7g01322 . 10 76 Plant Defensins gene family AT1G61070 32.353 4.08e-10 48.9
Chla9g00666 . 12 77 Plant Defensins gene family AT2G02130 53.03 1.88e-21 78.2
Chla9g00538 . 8 77 Plant Defensins gene family AT2G02130 46.835 7.93e-21 76.6
Chla9g00539 . 3 77 Plant Defensins gene family AT2G02100 43.75 5.47e-21 77.0
Chla2g01794 . 1 69 Plant Defensins gene family AT1G19610 43.478 1.42e-17 68.2
Chla6g06502 . 3 78 Plant Defensins gene family AT1G19610 53.947 8.20e-26 90.5
Chla7g01374 . 12 76 Plant Defensins gene family AT1G61070 37.879 1.33e-11 52.8
Chla7g01331 . 23 76 Plant Defensins gene family AT1G61070 40.741 1.32e-10 51.6
Chla2g01761 . 14 78 Plant Defensins gene family AT1G19610 53.846 8.34e-24 83.6
Chla2g01759 . 6 78 Plant Defensins gene family AT1G19610 48.684 3.87e-25 87.4
Chla7g01320 . 12 76 Plant Defensins gene family AT1G61070 37.879 1.32e-11 52.8
Chla6g06512 . 7 78 Plant Defensins gene family AT1G19610 41.667 1.19e-12 60.5
Chla1g02578 . 2 78 Plant Defensins gene family AT1G19610 37.975 1.07e-11 53.5
Chla9g00651 . 8 73 Plant Defensins gene family AT5G63660 44.118 8.24e-16 63.5
Chla9g00652 . 3 77 Plant Defensins gene family AT2G02100 43.75 4.79e-21 77.0
Chla1g07016 . 1 78 Plant Defensins gene family AT1G19610 50.0 4.08e-23 83.6
Chla5g03734 . 1 77 Plant Defensins gene family AT2G02120 61.538 1.15e-31 103.0
Chla6g06518 . 1 78 Plant Defensins gene family AT1G19610 42.308 1.50e-18 73.6
Chla9g00668 . 3 77 Plant Defensins gene family AT2G02100 51.25 5.26e-24 85.1
Chla9g05223 . 2 73 Plant Defensins gene family AT5G63660 61.644 1.56e-26 90.5
Chla6g06507 . 13 78 Plant Defensins gene family AT1G19610 57.576 1.53e-25 89.7
Chla6g06520 . 13 78 Plant Defensins gene family AT1G19610 56.061 5.32e-24 86.3
Chla6g06506 . 1 78 Plant Defensins gene family AT1G19610 52.564 2.39e-26 92.0
Chla5g03727 . 1 77 Plant Defensins gene family AT2G02100 61.538 3.81e-32 105.0
Chla7g01333 . 7 77 Plant Defensins gene family AT2G02120 35.211 6.17e-12 53.5
Chla5g03791 . 1 70 Plant Defensins gene family AT2G02120 54.93 2.56e-25 87.4
Chla2g01787 . 5 78 Plant Defensins gene family AT1G19610 35.065 8.29e-10 48.5
Chla2g01788 . 5 78 Plant Defensins gene family AT1G19610 44.156 4.17e-19 72.4
Chla9g00665 . 12 77 Plant Defensins gene family AT2G02130 54.545 2.09e-21 77.4